Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VOK entry

There are 8 chains in PDB entry 5VOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 90
B
 SER 0ARG 92
C
 ALA 3ALA 90
D
 ALA 4ARG 92
E
 MET 1ALA 90
F
 SER 0ARG 92
G
 ALA 3ALA 90
H
 ALA 4ARG 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5VOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
B
36 51Right-handed alpha
Helix 4
AA4
C
4 14Right-handed alpha
Helix 5
AA5
C
41 54Right-handed alpha
Helix 6
AA6
D
36 52Right-handed alpha
Helix 7
AA7
E
4 14Right-handed alpha
Helix 8
AA8
E
40 53Right-handed alpha
Helix 9
AA9
F
39 53Right-handed alpha
Helix 10
AB1
G
4 15Right-handed alpha
Helix 11
AB2
G
38 56Right-handed alpha
Helix 12
AB3
H
37 50Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5VOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
20 24anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
76 79anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
15 22anti-parallel
Strand 3
B
83 90anti-parallel
Strand 4
B
73 79anti-parallel
Strand 5
B
66 69anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
82 88anti-parallel
Strand 4
C
73 79anti-parallel
Strand 5
C
64 68anti-parallel
Strand 6
D
65 69anti-parallel
Strand 7
D
74 79anti-parallel
Strand 8
D
84 89anti-parallel
Strand 9
D
17 22anti-parallel
Strand 10
D
25 30anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 35first strand
Strand 2
E
20 24anti-parallel
Strand 3
E
83 87anti-parallel
Strand 4
E
74 77anti-parallel
Strand 5
E
64 68anti-parallel
Strand 6
F
65 69anti-parallel
Strand 7
F
74 80anti-parallel
Strand 8
F
83 89anti-parallel
Strand 9
F
17 22anti-parallel
Strand 10
F
25 31anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
30 35first strand
Strand 2
G
18 24anti-parallel
Strand 3
G
82 88anti-parallel
Strand 4
G
73 79anti-parallel
Strand 5
G
64 68anti-parallel
Strand 6
H
65 69anti-parallel
Strand 7
H
73 80anti-parallel
Strand 8
H
83 90anti-parallel
Strand 9
H
15 21anti-parallel
Strand 10
H
26 31anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il