Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VOL entry

There are 8 chains in PDB entry 5VOL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 20	GLY 286
B	ASN 20	GLY 286
C	PRO 18	PHE 285
D	ASN 20	PHE 285
E	TRP 19	PHE 285
F	ASN 20	GLY 286
G	ASN 20	PHE 285
H	PHE 21	PHE 285

There are 88 helices in PDB entry 5VOL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	76	Right-handed alpha
Helix 2	AA2	A	78	89	Right-handed alpha
Helix 3	AA3	A	121	128	Right-handed alpha
Helix 4	AA4	A	128	137	Right-handed alpha
Helix 5	AA5	A	142	144	Right-handed 310
Helix 6	AA6	A	152	165	Right-handed alpha
Helix 7	AA7	A	194	206	Right-handed alpha
Helix 8	AA8	A	207	214	Right-handed alpha
Helix 9	AA9	A	216	224	Right-handed alpha
Helix 10	AB1	A	238	252	Right-handed alpha
Helix 11	AB2	A	266	285	Right-handed alpha
Helix 12	AB3	B	71	76	Right-handed alpha
Helix 13	AB4	B	78	90	Right-handed alpha
Helix 14	AB5	B	121	128	Right-handed alpha
Helix 15	AB6	B	128	137	Right-handed alpha
Helix 16	AB7	B	142	144	Right-handed 310
Helix 17	AB8	B	152	165	Right-handed alpha
Helix 18	AB9	B	194	206	Right-handed alpha
Helix 19	AC1	B	207	214	Right-handed alpha
Helix 20	AC2	B	216	225	Right-handed alpha
Helix 21	AC3	B	238	252	Right-handed alpha
Helix 22	AC4	B	266	286	Right-handed alpha
Helix 23	AC5	C	71	76	Right-handed alpha
Helix 24	AC6	C	78	89	Right-handed alpha
Helix 25	AC7	C	121	128	Right-handed alpha
Helix 26	AC8	C	128	137	Right-handed alpha
Helix 27	AC9	C	142	144	Right-handed 310
Helix 28	AD1	C	152	165	Right-handed alpha
Helix 29	AD2	C	194	206	Right-handed alpha
Helix 30	AD3	C	207	214	Right-handed alpha
Helix 31	AD4	C	216	224	Right-handed alpha
Helix 32	AD5	C	238	252	Right-handed alpha
Helix 33	AD6	C	266	285	Right-handed alpha
Helix 34	AD7	D	71	76	Right-handed alpha
Helix 35	AD8	D	78	89	Right-handed alpha
Helix 36	AD9	D	121	128	Right-handed alpha
Helix 37	AE1	D	128	137	Right-handed alpha
Helix 38	AE2	D	142	144	Right-handed 310
Helix 39	AE3	D	152	165	Right-handed alpha
Helix 40	AE4	D	194	206	Right-handed alpha
Helix 41	AE5	D	207	214	Right-handed alpha
Helix 42	AE6	D	216	225	Right-handed alpha
Helix 43	AE7	D	238	252	Right-handed alpha
Helix 44	AE8	D	266	285	Right-handed alpha
Helix 45	AE9	E	71	76	Right-handed alpha
Helix 46	AF1	E	78	89	Right-handed alpha
Helix 47	AF2	E	121	128	Right-handed alpha
Helix 48	AF3	E	128	137	Right-handed alpha
Helix 49	AF4	E	142	144	Right-handed 310
Helix 50	AF5	E	152	165	Right-handed alpha
Helix 51	AF6	E	194	206	Right-handed alpha
Helix 52	AF7	E	207	214	Right-handed alpha
Helix 53	AF8	E	216	224	Right-handed alpha
Helix 54	AF9	E	238	252	Right-handed alpha
Helix 55	AG1	E	266	285	Right-handed alpha
Helix 56	AG2	F	71	76	Right-handed alpha
Helix 57	AG3	F	78	89	Right-handed alpha
Helix 58	AG4	F	121	128	Right-handed alpha
Helix 59	AG5	F	128	137	Right-handed alpha
Helix 60	AG6	F	142	144	Right-handed 310
Helix 61	AG7	F	152	165	Right-handed alpha
Helix 62	AG8	F	194	206	Right-handed alpha
Helix 63	AG9	F	207	214	Right-handed alpha
Helix 64	AH1	F	216	224	Right-handed alpha
Helix 65	AH2	F	238	252	Right-handed alpha
Helix 66	AH3	F	266	285	Right-handed alpha
Helix 67	AH4	G	71	76	Right-handed alpha
Helix 68	AH5	G	78	89	Right-handed alpha
Helix 69	AH6	G	121	128	Right-handed alpha
Helix 70	AH7	G	128	137	Right-handed alpha
Helix 71	AH8	G	142	144	Right-handed 310
Helix 72	AH9	G	152	165	Right-handed alpha
Helix 73	AI1	G	194	206	Right-handed alpha
Helix 74	AI2	G	207	214	Right-handed alpha
Helix 75	AI3	G	216	225	Right-handed alpha
Helix 76	AI4	G	238	252	Right-handed alpha
Helix 77	AI5	G	266	285	Right-handed alpha
Helix 78	AI6	H	71	76	Right-handed alpha
Helix 79	AI7	H	78	89	Right-handed alpha
Helix 80	AI8	H	121	128	Right-handed alpha
Helix 81	AI9	H	128	137	Right-handed alpha
Helix 82	AJ1	H	142	144	Right-handed 310
Helix 83	AJ2	H	152	165	Right-handed alpha
Helix 84	AJ3	H	194	206	Right-handed alpha
Helix 85	AJ4	H	207	214	Right-handed alpha
Helix 86	AJ5	H	216	224	Right-handed alpha
Helix 87	AJ6	H	238	252	Right-handed alpha
Helix 88	AJ7	H	266	285	Right-handed alpha

There are 16 sheets in PDB entry 5VOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	32	first strand
Strand 2	A	37	45	anti-parallel
Strand 3	A	96	100	anti-parallel
Strand 4	A	59	63	parallel
Strand 5	A	146	151	parallel
Strand 6	A	171	175	parallel
Strand 7	A	227	231	parallel
Strand 8	A	257	259	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	119	120	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	32	first strand
Strand 2	B	37	45	anti-parallel
Strand 3	B	96	100	anti-parallel
Strand 4	B	59	63	parallel
Strand 5	B	146	151	parallel
Strand 6	B	171	175	parallel
Strand 7	B	227	231	parallel
Strand 8	B	257	259	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	119	120	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	32	first strand
Strand 2	C	37	45	anti-parallel
Strand 3	C	96	100	anti-parallel
Strand 4	C	59	63	parallel
Strand 5	C	146	151	parallel
Strand 6	C	171	175	parallel
Strand 7	C	227	231	parallel
Strand 8	C	257	259	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	119	120	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	32	first strand
Strand 2	D	37	45	anti-parallel
Strand 3	D	96	100	anti-parallel
Strand 4	D	59	63	parallel
Strand 5	D	146	151	parallel
Strand 6	D	171	175	parallel
Strand 7	D	227	231	parallel
Strand 8	D	257	259	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	119	120	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	32	first strand
Strand 2	E	37	45	anti-parallel
Strand 3	E	96	100	anti-parallel
Strand 4	E	59	63	parallel
Strand 5	E	146	151	parallel
Strand 6	E	171	175	parallel
Strand 7	E	227	231	parallel
Strand 8	E	257	259	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	116	first strand
Strand 2	E	119	120	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	32	first strand
Strand 2	F	37	45	anti-parallel
Strand 3	F	96	100	anti-parallel
Strand 4	F	59	63	parallel
Strand 5	F	146	151	parallel
Strand 6	F	171	175	parallel
Strand 7	F	227	231	parallel
Strand 8	F	257	259	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	F	119	120	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	32	first strand
Strand 2	G	37	45	anti-parallel
Strand 3	G	96	100	anti-parallel
Strand 4	G	59	63	parallel
Strand 5	G	146	151	parallel
Strand 6	G	171	175	parallel
Strand 7	G	227	231	parallel
Strand 8	G	256	259	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	116	first strand
Strand 2	G	119	120	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	32	first strand
Strand 2	H	37	45	anti-parallel
Strand 3	H	96	100	anti-parallel
Strand 4	H	59	63	parallel
Strand 5	H	146	151	parallel
Strand 6	H	171	175	parallel
Strand 7	H	227	231	parallel
Strand 8	H	256	259	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	116	first strand
Strand 2	H	119	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VOL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOL