Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VOO entry

There are 6 chains in PDB entry 5VOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 367	HIS 648
B	SER 367	HIS 648
C	ALA 366	ALA 647
D	SER 367	GLU 646
E	SER 367	ALA 647
F	SER 367	GLU 646

There are 85 helices in PDB entry 5VOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	380	389	Right-handed alpha
Helix 2	AA2	A	391	405	Right-handed alpha
Helix 3	AA3	A	420	436	Right-handed alpha
Helix 4	AA4	A	446	457	Right-handed alpha
Helix 5	AA5	A	471	486	Right-handed alpha
Helix 6	AA6	A	502	520	Right-handed alpha
Helix 7	AA7	A	524	526	Right-handed 310
Helix 8	AA8	A	546	562	Right-handed alpha
Helix 9	AA9	A	572	576	Right-handed 310
Helix 10	AB1	A	579	598	Right-handed alpha
Helix 11	AB2	A	605	609	Right-handed 310
Helix 12	AB3	A	611	615	Right-handed 310
Helix 13	AB4	A	616	628	Right-handed alpha
Helix 14	AB5	A	636	648	Right-handed alpha
Helix 15	AB6	B	380	389	Right-handed alpha
Helix 16	AB7	B	391	405	Right-handed alpha
Helix 17	AB8	B	420	436	Right-handed alpha
Helix 18	AB9	B	446	457	Right-handed alpha
Helix 19	AC1	B	471	486	Right-handed alpha
Helix 20	AC2	B	502	520	Right-handed alpha
Helix 21	AC3	B	524	526	Right-handed 310
Helix 22	AC4	B	536	540	Right-handed 310
Helix 23	AC5	B	546	562	Right-handed alpha
Helix 24	AC6	B	572	576	Right-handed 310
Helix 25	AC7	B	579	598	Right-handed alpha
Helix 26	AC8	B	605	609	Right-handed 310
Helix 27	AC9	B	611	615	Right-handed 310
Helix 28	AD1	B	616	628	Right-handed alpha
Helix 29	AD2	B	636	647	Right-handed alpha
Helix 30	AD3	C	380	389	Right-handed alpha
Helix 31	AD4	C	391	405	Right-handed alpha
Helix 32	AD5	C	420	436	Right-handed alpha
Helix 33	AD6	C	446	457	Right-handed alpha
Helix 34	AD7	C	471	486	Right-handed alpha
Helix 35	AD8	C	502	520	Right-handed alpha
Helix 36	AD9	C	524	526	Right-handed 310
Helix 37	AE1	C	546	562	Right-handed alpha
Helix 38	AE2	C	572	576	Right-handed 310
Helix 39	AE3	C	579	597	Right-handed alpha
Helix 40	AE4	C	605	609	Right-handed 310
Helix 41	AE5	C	611	615	Right-handed 310
Helix 42	AE6	C	616	628	Right-handed alpha
Helix 43	AE7	C	636	645	Right-handed alpha
Helix 44	AE8	D	380	389	Right-handed alpha
Helix 45	AE9	D	391	405	Right-handed alpha
Helix 46	AF1	D	420	436	Right-handed alpha
Helix 47	AF2	D	446	457	Right-handed alpha
Helix 48	AF3	D	471	485	Right-handed alpha
Helix 49	AF4	D	502	520	Right-handed alpha
Helix 50	AF5	D	524	526	Right-handed 310
Helix 51	AF6	D	546	562	Right-handed alpha
Helix 52	AF7	D	572	576	Right-handed 310
Helix 53	AF8	D	579	598	Right-handed alpha
Helix 54	AF9	D	605	609	Right-handed 310
Helix 55	AG1	D	611	615	Right-handed 310
Helix 56	AG2	D	616	628	Right-handed alpha
Helix 57	AG3	D	636	644	Right-handed alpha
Helix 58	AG4	E	380	389	Right-handed alpha
Helix 59	AG5	E	391	405	Right-handed alpha
Helix 60	AG6	E	420	436	Right-handed alpha
Helix 61	AG7	E	446	457	Right-handed alpha
Helix 62	AG8	E	471	486	Right-handed alpha
Helix 63	AG9	E	502	520	Right-handed alpha
Helix 64	AH1	E	524	526	Right-handed 310
Helix 65	AH2	E	546	562	Right-handed alpha
Helix 66	AH3	E	572	576	Right-handed 310
Helix 67	AH4	E	579	598	Right-handed alpha
Helix 68	AH5	E	605	609	Right-handed 310
Helix 69	AH6	E	611	615	Right-handed 310
Helix 70	AH7	E	616	628	Right-handed alpha
Helix 71	AH8	E	636	645	Right-handed alpha
Helix 72	AH9	F	380	390	Right-handed alpha
Helix 73	AI1	F	391	405	Right-handed alpha
Helix 74	AI2	F	420	436	Right-handed alpha
Helix 75	AI3	F	446	457	Right-handed alpha
Helix 76	AI4	F	471	485	Right-handed alpha
Helix 77	AI5	F	502	520	Right-handed alpha
Helix 78	AI6	F	524	526	Right-handed 310
Helix 79	AI7	F	546	562	Right-handed alpha
Helix 80	AI8	F	572	576	Right-handed 310
Helix 81	AI9	F	579	597	Right-handed alpha
Helix 82	AJ1	F	605	609	Right-handed 310
Helix 83	AJ2	F	611	615	Right-handed 310
Helix 84	AJ3	F	616	628	Right-handed alpha
Helix 85	AJ4	F	636	644	Right-handed alpha

There are 12 sheets in PDB entry 5VOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	376	first strand
Strand 2	A	409	413	parallel
Strand 3	A	440	443	parallel
Strand 4	A	461	466	parallel
Strand 5	A	488	492	parallel
Strand 6	A	528	531	parallel
Strand 7	A	566	570	parallel
Strand 8	A	601	604	parallel
Strand 9	A	369	376	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	498	499	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	376	first strand
Strand 2	B	409	413	parallel
Strand 3	B	440	443	parallel
Strand 4	B	461	466	parallel
Strand 5	B	488	492	parallel
Strand 6	B	528	531	parallel
Strand 7	B	566	570	parallel
Strand 8	B	601	604	parallel
Strand 9	B	369	376	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	495	first strand
Strand 2	B	498	499	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	376	first strand
Strand 2	C	409	413	parallel
Strand 3	C	440	443	parallel
Strand 4	C	461	466	parallel
Strand 5	C	488	492	parallel
Strand 6	C	528	531	parallel
Strand 7	C	566	570	parallel
Strand 8	C	601	604	parallel
Strand 9	C	369	376	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	495	first strand
Strand 2	C	498	499	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	376	first strand
Strand 2	D	409	413	parallel
Strand 3	D	440	443	parallel
Strand 4	D	461	466	parallel
Strand 5	D	488	492	parallel
Strand 6	D	528	531	parallel
Strand 7	D	566	570	parallel
Strand 8	D	601	604	parallel
Strand 9	D	369	376	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	495	first strand
Strand 2	D	498	499	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	376	first strand
Strand 2	E	409	413	parallel
Strand 3	E	440	443	parallel
Strand 4	E	461	466	parallel
Strand 5	E	488	492	parallel
Strand 6	E	528	531	parallel
Strand 7	E	566	570	parallel
Strand 8	E	601	604	parallel
Strand 9	E	369	376	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	495	first strand
Strand 2	E	498	499	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	369	376	first strand
Strand 2	F	409	413	parallel
Strand 3	F	440	443	parallel
Strand 4	F	461	466	parallel
Strand 5	F	489	492	parallel
Strand 6	F	528	531	parallel
Strand 7	F	566	570	parallel
Strand 8	F	601	604	parallel
Strand 9	F	369	376	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	494	495	first strand
Strand 2	F	498	499	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOO