Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VOP entry

There are 2 chains in PDB entry 5VOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 367HIS 648
B
 SER 367HIS 648
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5VOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
380 389Right-handed alpha
Helix 2
AA2
A
391 405Right-handed alpha
Helix 3
AA3
A
420 436Right-handed alpha
Helix 4
AA4
A
446 457Right-handed alpha
Helix 5
AA5
A
471 486Right-handed alpha
Helix 6
AA6
A
502 519Right-handed alpha
Helix 7
AA7
A
524 526Right-handed 310
Helix 8
AA8
A
546 562Right-handed alpha
Helix 9
AA9
A
572 576Right-handed 310
Helix 10
AB1
A
579 598Right-handed alpha
Helix 11
AB2
A
605 609Right-handed 310
Helix 12
AB3
A
611 615Right-handed 310
Helix 13
AB4
A
616 628Right-handed alpha
Helix 14
AB5
A
636 647Right-handed alpha
Helix 15
AB6
B
380 389Right-handed alpha
Helix 16
AB7
B
391 405Right-handed alpha
Helix 17
AB8
B
420 436Right-handed alpha
Helix 18
AB9
B
446 457Right-handed alpha
Helix 19
AC1
B
471 486Right-handed alpha
Helix 20
AC2
B
502 520Right-handed alpha
Helix 21
AC3
B
524 526Right-handed 310
Helix 22
AC4
B
546 562Right-handed alpha
Helix 23
AC5
B
572 576Right-handed 310
Helix 24
AC6
B
579 598Right-handed alpha
Helix 25
AC7
B
605 609Right-handed 310
Helix 26
AC8
B
611 615Right-handed 310
Helix 27
AC9
B
616 628Right-handed alpha
Helix 28
AD1
B
636 648Right-handed alpha
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There are 4 sheets in PDB entry 5VOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 376first strand
Strand 2
A
409 413parallel
Strand 3
A
440 443parallel
Strand 4
A
461 466parallel
Strand 5
A
488 492parallel
Strand 6
A
528 531parallel
Strand 7
A
566 570parallel
Strand 8
A
601 604parallel
Strand 9
A
369 376parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
498 499anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 376first strand
Strand 2
B
409 413parallel
Strand 3
B
440 443parallel
Strand 4
B
461 466parallel
Strand 5
B
488 492parallel
Strand 6
B
528 531parallel
Strand 7
B
566 570parallel
Strand 8
B
601 604parallel
Strand 9
B
369 376parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 495first strand
Strand 2
B
498 499anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il