Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VOT entry

There are 8 chains in PDB entry 5VOT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 391	MET 825
C	GLU 391	MET 825
D	GLU 391	MET 825
E	ARG 6	ARG 213
F	ARG 6	ARG 213
G	ARG 6	ARG 213
H	ARG 6	ARG 213
B	GLU 391	MET 825

There are 90 helices in PDB entry 5VOT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	411	415	Right-handed 310
Helix 2	AA2	A	416	419	Right-handed 310
Helix 3	AA3	A	423	437	Right-handed alpha
Helix 4	AA4	A	461	469	Right-handed alpha
Helix 5	AA5	A	482	487	Right-handed alpha
Helix 6	AA6	A	513	517	Right-handed 310
Helix 7	AA7	A	522	546	Right-handed alpha
Helix 8	AA8	A	568	571	Right-handed 310
Helix 9	AA9	A	572	585	Right-handed alpha
Helix 10	AB1	A	595	625	Right-handed alpha
Helix 11	AB2	A	635	641	Right-handed alpha
Helix 12	AB3	A	653	662	Right-handed alpha
Helix 13	AB4	A	664	675	Right-handed alpha
Helix 14	AB5	A	685	695	Right-handed alpha
Helix 15	AB6	A	706	714	Right-handed alpha
Helix 16	AB7	A	742	757	Right-handed alpha
Helix 17	AB8	A	757	767	Right-handed alpha
Helix 18	AB9	A	789	825	Right-handed alpha
Helix 19	AC1	C	411	415	Right-handed 310
Helix 20	AC2	C	416	419	Right-handed 310
Helix 21	AC3	C	423	437	Right-handed alpha
Helix 22	AC4	C	461	469	Right-handed alpha
Helix 23	AC5	C	482	487	Right-handed alpha
Helix 24	AC6	C	513	517	Right-handed 310
Helix 25	AC7	C	522	546	Right-handed alpha
Helix 26	AC8	C	568	571	Right-handed 310
Helix 27	AC9	C	572	585	Right-handed alpha
Helix 28	AD1	C	595	625	Right-handed alpha
Helix 29	AD2	C	635	641	Right-handed alpha
Helix 30	AD3	C	653	662	Right-handed alpha
Helix 31	AD4	C	664	675	Right-handed alpha
Helix 32	AD5	C	685	695	Right-handed alpha
Helix 33	AD6	C	706	714	Right-handed alpha
Helix 34	AD7	C	742	756	Right-handed alpha
Helix 35	AD8	C	757	767	Right-handed alpha
Helix 36	AD9	C	790	825	Right-handed alpha
Helix 37	AE1	D	411	415	Right-handed 310
Helix 38	AE2	D	416	419	Right-handed 310
Helix 39	AE3	D	423	437	Right-handed alpha
Helix 40	AE4	D	461	469	Right-handed alpha
Helix 41	AE5	D	482	487	Right-handed alpha
Helix 42	AE6	D	512	518	Right-handed 310
Helix 43	AE7	D	524	545	Right-handed alpha
Helix 44	AE8	D	572	585	Right-handed alpha
Helix 45	AE9	D	597	621	Right-handed alpha
Helix 46	AF1	D	635	641	Right-handed alpha
Helix 47	AF2	D	653	661	Right-handed alpha
Helix 48	AF3	D	664	676	Right-handed alpha
Helix 49	AF4	D	685	695	Right-handed alpha
Helix 50	AF5	D	706	714	Right-handed alpha
Helix 51	AF6	D	742	757	Right-handed alpha
Helix 52	AF7	D	757	768	Right-handed alpha
Helix 53	AF8	D	792	824	Right-handed alpha
Helix 54	AF9	E	7	30	Right-handed alpha
Helix 55	AG1	E	93	103	Right-handed alpha
Helix 56	AG2	E	105	127	Right-handed alpha
Helix 57	AG3	E	133	160	Right-handed alpha
Helix 58	AG4	E	177	212	Right-handed alpha
Helix 59	AG5	F	7	30	Right-handed alpha
Helix 60	AG6	F	94	103	Right-handed alpha
Helix 61	AG7	F	105	127	Right-handed alpha
Helix 62	AG8	F	132	160	Right-handed alpha
Helix 63	AG9	F	177	213	Right-handed alpha
Helix 64	AH1	G	7	30	Right-handed alpha
Helix 65	AH2	G	93	103	Right-handed alpha
Helix 66	AH3	G	105	127	Right-handed alpha
Helix 67	AH4	G	133	160	Right-handed alpha
Helix 68	AH5	G	177	211	Right-handed alpha
Helix 69	AH6	H	7	30	Right-handed alpha
Helix 70	AH7	H	94	103	Right-handed alpha
Helix 71	AH8	H	105	127	Right-handed alpha
Helix 72	AH9	H	132	160	Right-handed alpha
Helix 73	AI1	H	177	213	Right-handed alpha
Helix 74	AI2	B	411	415	Right-handed 310
Helix 75	AI3	B	416	419	Right-handed 310
Helix 76	AI4	B	423	437	Right-handed alpha
Helix 77	AI5	B	461	469	Right-handed alpha
Helix 78	AI6	B	482	487	Right-handed alpha
Helix 79	AI7	B	512	518	Right-handed 310
Helix 80	AI8	B	524	545	Right-handed alpha
Helix 81	AI9	B	572	585	Right-handed alpha
Helix 82	AJ1	B	597	621	Right-handed alpha
Helix 83	AJ2	B	635	641	Right-handed alpha
Helix 84	AJ3	B	653	661	Right-handed alpha
Helix 85	AJ4	B	664	676	Right-handed alpha
Helix 86	AJ5	B	685	695	Right-handed alpha
Helix 87	AJ6	B	706	714	Right-handed alpha
Helix 88	AJ7	B	742	757	Right-handed alpha
Helix 89	AJ8	B	757	768	Right-handed alpha
Helix 90	AJ9	B	792	824	Right-handed alpha

There are 24 sheets in PDB entry 5VOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	444	first strand
Strand 2	A	394	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	735	736	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	444	first strand
Strand 2	C	394	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	735	736	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	36	first strand
Strand 2	E	58	61	anti-parallel
Strand 3	E	66	68	anti-parallel
Strand 4	E	77	78	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	36	first strand
Strand 2	F	58	61	anti-parallel
Strand 3	F	65	68	anti-parallel
Strand 4	F	77	79	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	35	first strand
Strand 2	G	59	61	anti-parallel
Strand 3	G	66	68	anti-parallel
Strand 4	G	77	78	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	36	first strand
Strand 2	H	58	61	anti-parallel
Strand 3	H	65	68	anti-parallel
Strand 4	H	77	79	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VOT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOT