Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VPF entry

There are 8 chains in PDB entry 5VPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 152HIS 218
B
 GLN 266VAL 332
E
 C 1 G 19
F
 C 1 G 19
C
 GLU 154ALA 217
D
 GLU 267HIS 331
G
 C 1 G 19
H
 C 1 G 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5VPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 217Right-handed alpha
Helix 2
AA2
B
267 330Right-handed alpha
Helix 3
AA3
C
156 216Right-handed alpha
Helix 4
AA4
D
268 330Right-handed alpha
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There are no sheets in PDB entry 5VPF
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il