Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VPH entry

There are 3 chains in PDB entry 5VPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LEU 222
C
 GLN 1ARG 211
D
 GLU 1PRO 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5VPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed alpha
Helix 2
AA2
A
33 52Right-handed alpha
Helix 3
AA3
A
58 66Right-handed alpha
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
75 87Right-handed alpha
Helix 6
AA6
A
91 94Right-handed 310
Helix 7
AA7
A
123 135Right-handed alpha
Helix 8
AA8
A
146 152Right-handed alpha
Helix 9
AA9
A
209 213Right-handed 310
Helix 10
AB1
C
79 83Right-handed 310
Helix 11
AB2
C
121 127Right-handed alpha
Helix 12
AB3
C
183 188Right-handed alpha
Helix 13
AB4
D
62 65Right-handed 310
Helix 14
AB5
D
87 91Right-handed 310
Helix 15
AB6
D
194 196Right-handed 310
Helix 16
AB7
D
208 211Right-handed 310
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There are 14 sheets in PDB entry 5VPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
115 118parallel
Strand 3
A
217 221anti-parallel
Strand 4
A
138 144anti-parallel
Strand 5
A
168 180anti-parallel
Strand 6
A
14 15anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
115 118parallel
Strand 3
A
217 221anti-parallel
Strand 4
A
138 144anti-parallel
Strand 5
A
168 180anti-parallel
Strand 6
A
183 189anti-parallel
Strand 7
A
201 205anti-parallel
Strand 8
A
158 159parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
110 111anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
62 67anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
102 106parallel
Strand 3
C
84 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
44 49anti-parallel
Strand 6
C
53 54anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
102 106parallel
Strand 3
C
84 90anti-parallel
Strand 4
C
97 98anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 118first strand
Strand 2
C
129 139anti-parallel
Strand 3
C
173 182anti-parallel
Strand 4
C
159 163anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 155first strand
Strand 2
C
145 150anti-parallel
Strand 3
C
191 198anti-parallel
Strand 4
C
201 210anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
115 119parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
34 40anti-parallel
Strand 5
D
46 53anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
115 119parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
110 111anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 132first strand
Strand 2
D
143 153anti-parallel
Strand 3
D
182 192anti-parallel
Strand 4
D
172 173anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 132first strand
Strand 2
D
143 153anti-parallel
Strand 3
D
182 192anti-parallel
Strand 4
D
177 179anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 162first strand
Strand 2
D
202 207anti-parallel
Strand 3
D
212 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il