Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VPJ entry

There are 10 chains in PDB entry 5VPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	PRO 141
B	ALA 3	PRO 141
C	ALA 3	ASP 142
D	MSE 1	PRO 141
E	ALA 3	PRO 141
F	ARG 2	PRO 141
G	ALA 3	PRO 141
H	ARG 2	PRO 141
I	ALA 3	ASP 142
J	TYR 4	PRO 44

There are 52 helices in PDB entry 5VPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	24	43	Right-handed alpha
Helix 3	AA3	A	43	51	Right-handed alpha
Helix 4	AA4	A	129	137	Right-handed alpha
Helix 5	AA5	A	138	140	Right-handed 310
Helix 6	AA6	B	12	16	Right-handed 310
Helix 7	AA7	B	24	43	Right-handed alpha
Helix 8	AA8	B	43	50	Right-handed alpha
Helix 9	AA9	B	129	138	Right-handed alpha
Helix 10	AB1	C	12	16	Right-handed 310
Helix 11	AB2	C	24	43	Right-handed alpha
Helix 12	AB3	C	43	50	Right-handed alpha
Helix 13	AB4	C	129	138	Right-handed alpha
Helix 14	AB5	D	12	16	Right-handed 310
Helix 15	AB6	D	24	43	Right-handed alpha
Helix 16	AB7	D	43	51	Right-handed alpha
Helix 17	AB8	D	129	138	Right-handed alpha
Helix 18	AB9	E	12	16	Right-handed 310
Helix 19	AC1	E	24	43	Right-handed alpha
Helix 20	AC2	E	43	50	Right-handed alpha
Helix 21	AC3	E	129	137	Right-handed alpha
Helix 22	AC4	E	138	140	Right-handed 310
Helix 23	AC5	F	12	16	Right-handed 310
Helix 24	AC6	F	24	43	Right-handed alpha
Helix 25	AC7	F	43	50	Right-handed alpha
Helix 26	AC8	F	129	138	Right-handed alpha
Helix 27	AC9	G	12	16	Right-handed 310
Helix 28	AD1	G	24	43	Right-handed alpha
Helix 29	AD2	G	43	50	Right-handed alpha
Helix 30	AD3	G	129	138	Right-handed alpha
Helix 31	AD4	H	12	16	Right-handed 310
Helix 32	AD5	H	24	43	Right-handed alpha
Helix 33	AD6	H	43	50	Right-handed alpha
Helix 34	AD7	H	129	138	Right-handed alpha
Helix 35	AD8	I	12	16	Right-handed 310
Helix 36	AD9	I	24	43	Right-handed alpha
Helix 37	AE1	I	43	50	Right-handed alpha
Helix 38	AE2	I	129	138	Right-handed alpha
Helix 39	AE3	J	12	16	Right-handed 310
Helix 40	AE4	J	24	43	Right-handed alpha
Helix 41	AE5	J	43	50	Right-handed alpha
Helix 42	AE6	J	129	138	Right-handed alpha
Helix 43	AE7	K	12	16	Right-handed 310
Helix 44	AE8	K	24	42	Right-handed alpha
Helix 45	AE9	K	43	50	Right-handed alpha
Helix 46	AF1	K	129	137	Right-handed alpha
Helix 47	AF2	K	138	140	Right-handed 310
Helix 48	AF3	L	12	16	Right-handed 310
Helix 49	AF4	L	24	43	Right-handed alpha
Helix 50	AF5	L	43	51	Right-handed alpha
Helix 51	AF6	L	129	137	Right-handed alpha
Helix 52	AF7	L	138	140	Right-handed 310

There are 12 sheets in PDB entry 5VPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	74	85	anti-parallel
Strand 3	A	88	97	anti-parallel
Strand 4	A	104	117	anti-parallel
Strand 5	A	54	65	anti-parallel
Strand 6	B	54	65	anti-parallel
Strand 7	B	104	118	anti-parallel
Strand 8	B	88	97	anti-parallel
Strand 9	B	74	85	anti-parallel
Strand 10	B	5	10	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	104	117	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	B	54	65	anti-parallel
Strand 5	B	104	118	anti-parallel
Strand 6	B	123	125	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	74	85	anti-parallel
Strand 3	C	88	97	anti-parallel
Strand 4	C	104	119	anti-parallel
Strand 5	C	54	65	anti-parallel
Strand 6	D	54	65	anti-parallel
Strand 7	D	104	117	anti-parallel
Strand 8	D	88	97	anti-parallel
Strand 9	D	74	85	anti-parallel
Strand 10	D	5	10	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	104	119	anti-parallel
Strand 3	C	54	65	anti-parallel
Strand 4	D	54	65	anti-parallel
Strand 5	D	104	117	anti-parallel
Strand 6	D	124	125	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	10	first strand
Strand 2	E	74	84	anti-parallel
Strand 3	E	88	97	anti-parallel
Strand 4	E	104	117	anti-parallel
Strand 5	E	54	65	anti-parallel
Strand 6	F	54	65	anti-parallel
Strand 7	F	104	117	anti-parallel
Strand 8	F	88	97	anti-parallel
Strand 9	F	74	85	anti-parallel
Strand 10	F	5	10	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	125	first strand
Strand 2	E	104	117	anti-parallel
Strand 3	E	54	65	anti-parallel
Strand 4	F	54	65	anti-parallel
Strand 5	F	104	117	anti-parallel
Strand 6	F	124	125	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	10	first strand
Strand 2	G	74	85	anti-parallel
Strand 3	G	88	97	anti-parallel
Strand 4	G	104	117	anti-parallel
Strand 5	G	124	125	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	10	first strand
Strand 2	G	74	85	anti-parallel
Strand 3	G	88	97	anti-parallel
Strand 4	G	104	117	anti-parallel
Strand 5	G	54	65	anti-parallel
Strand 6	H	54	65	anti-parallel
Strand 7	H	104	117	anti-parallel
Strand 8	H	88	97	anti-parallel
Strand 9	H	74	85	anti-parallel
Strand 10	H	5	10	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	10	first strand
Strand 2	I	74	85	anti-parallel
Strand 3	I	88	97	anti-parallel
Strand 4	I	104	117	anti-parallel
Strand 5	I	54	65	anti-parallel
Strand 6	J	55	65	anti-parallel
Strand 7	J	104	117	anti-parallel
Strand 8	J	88	97	anti-parallel
Strand 9	J	74	84	anti-parallel
Strand 10	J	5	10	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	125	first strand
Strand 2	I	104	117	anti-parallel
Strand 3	I	54	65	anti-parallel
Strand 4	J	55	65	anti-parallel
Strand 5	J	104	117	anti-parallel
Strand 6	J	124	125	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	10	first strand
Strand 2	K	74	85	anti-parallel
Strand 3	K	88	97	anti-parallel
Strand 4	K	104	116	anti-parallel
Strand 5	K	55	65	anti-parallel
Strand 6	L	54	65	anti-parallel
Strand 7	L	104	117	anti-parallel
Strand 8	L	88	97	anti-parallel
Strand 9	L	74	85	anti-parallel
Strand 10	L	5	10	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	10	first strand
Strand 2	K	74	85	anti-parallel
Strand 3	K	88	97	anti-parallel
Strand 4	K	104	116	anti-parallel
Strand 5	K	55	65	anti-parallel
Strand 6	L	54	65	anti-parallel
Strand 7	L	104	117	anti-parallel
Strand 8	L	124	125	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 5VPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPJ