Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VPL entry

There are 3 chains in PDB entry 5VPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	MET 223
C	GLN 1	ARG 211
D	GLU 1	ASP 222

There are 16 helices in PDB entry 5VPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	53	Right-handed alpha
Helix 2	AA2	A	59	67	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	76	88	Right-handed alpha
Helix 5	AA5	A	91	95	Right-handed 310
Helix 6	AA6	A	124	136	Right-handed alpha
Helix 7	AA7	A	147	153	Right-handed alpha
Helix 8	AA8	A	210	214	Right-handed 310
Helix 9	AA9	C	79	83	Right-handed 310
Helix 10	AB1	C	121	127	Right-handed alpha
Helix 11	AB2	C	183	188	Right-handed alpha
Helix 12	AB3	D	62	65	Right-handed 310
Helix 13	AB4	D	87	91	Right-handed 310
Helix 14	AB5	D	164	166	Right-handed 310
Helix 15	AB6	D	194	196	Right-handed 310
Helix 16	AB7	D	208	211	Right-handed 310

There are 14 sheets in PDB entry 5VPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	169	181	anti-parallel
Strand 3	A	139	145	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	169	181	anti-parallel
Strand 3	A	184	190	anti-parallel
Strand 4	A	202	206	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	219	222	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	44	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	145	150	anti-parallel
Strand 3	C	191	197	anti-parallel
Strand 4	C	205	210	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	46	53	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	110	111	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	143	153	anti-parallel
Strand 3	D	182	192	anti-parallel
Strand 4	D	171	173	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	143	153	anti-parallel
Strand 3	D	182	192	anti-parallel
Strand 4	D	177	179	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	202	207	anti-parallel
Strand 3	D	212	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPL