Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VPQ entry

There are 2 chains in PDB entry 5VPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ARG 281
B
 VAL 12ARG 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5VPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 29Right-handed alpha
Helix 2
AA2
A
57 59Right-handed 310
Helix 3
AA3
A
60 73Right-handed alpha
Helix 4
AA4
A
77 80Right-handed 310
Helix 5
AA5
A
86 90Right-handed 310
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
108 119Right-handed alpha
Helix 8
AA8
A
120 132Right-handed alpha
Helix 9
AA9
A
133 144Right-handed alpha
Helix 10
AB1
A
156 161Right-handed 310
Helix 11
AB2
A
171 184Right-handed alpha
Helix 12
AB3
A
190 203Right-handed alpha
Helix 13
AB4
A
210 215Right-handed 310
Helix 14
AB5
A
265 281Right-handed alpha
Helix 15
AB6
B
13 30Right-handed alpha
Helix 16
AB7
B
57 59Right-handed 310
Helix 17
AB8
B
60 75Right-handed alpha
Helix 18
AB9
B
77 80Right-handed 310
Helix 19
AC1
B
86 90Right-handed 310
Helix 20
AC2
B
96 100Right-handed 310
Helix 21
AC3
B
108 119Right-handed alpha
Helix 22
AC4
B
120 132Right-handed alpha
Helix 23
AC5
B
133 144Right-handed alpha
Helix 24
AC6
B
156 161Right-handed 310
Helix 25
AC7
B
171 184Right-handed alpha
Helix 26
AC8
B
190 203Right-handed alpha
Helix 27
AC9
B
210 215Right-handed 310
Helix 28
AD1
B
265 280Right-handed alpha
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There are 6 sheets in PDB entry 5VPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
248 255anti-parallel
Strand 4
A
234 241anti-parallel
Strand 5
A
221 228anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
169 170anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
102 107anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
32 39anti-parallel
Strand 3
B
248 255anti-parallel
Strand 4
B
234 241anti-parallel
Strand 5
B
221 228anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
169 170anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
106 107anti-parallel
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