Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VPR entry

There are 2 chains in PDB entry 5VPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 224
A
 MET 226ALA 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5VPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
11 15Right-handed 310
Helix 3
AA3
A
35 49Right-handed alpha
Helix 4
AA4
A
58 80Right-handed alpha
Helix 5
AA5
A
83 85Right-handed 310
Helix 6
AA6
A
92 104Right-handed alpha
Helix 7
AA7
A
105 108Right-handed 310
Helix 8
AA8
A
125 135Right-handed alpha
Helix 9
AA9
A
151 153Right-handed 310
Helix 10
AB1
A
154 159Right-handed alpha
Helix 11
AB2
A
180 192Right-handed alpha
Helix 12
AB3
A
210 215Right-handed alpha
Helix 13
AB4
A
224 226Right-handed 310
Helix 14
AB5
A
238 243Right-handed alpha
Helix 15
AB6
A
269 273Right-handed 310
Helix 16
AB7
A
278 296Right-handed alpha
Helix 17
AB8
A
296 317Right-handed alpha
Helix 18
AB9
A
343 354Right-handed alpha
Helix 19
AC1
A
387 406Right-handed alpha
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There are 4 sheets in PDB entry 5VPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
21 22anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
356 357parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
233 237anti-parallel
Strand 3
A
218 222anti-parallel
Strand 4
A
195 199parallel
Strand 5
A
163 169parallel
Strand 6
A
113 117parallel
Strand 7
A
138 142parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
333 337anti-parallel
Strand 3
A
378 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il