Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VPU entry

There is 1 chain in PDB entry 5VPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6SER 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5VPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 33Right-handed alpha
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
53 58Right-handed 310
Helix 4
AA4
A
66 77Right-handed alpha
Helix 5
AA5
A
82 94Right-handed alpha
Helix 6
AA6
A
95 98Right-handed 310
Helix 7
AA7
A
99 112Right-handed alpha
Helix 8
AA8
A
130 144Right-handed alpha
Helix 9
AA9
A
164 176Right-handed alpha
Helix 10
AB1
A
177 179Right-handed 310
Helix 11
AB2
A
190 194Right-handed alpha
Helix 12
AB3
A
199 213Right-handed alpha
Helix 13
AB4
A
221 232Right-handed alpha
Helix 14
AB5
A
235 239Right-handed 310
Helix 15
AB6
A
266 275Right-handed alpha
Helix 16
AB7
A
316 324Right-handed alpha
Helix 17
AB8
A
336 341Right-handed alpha
Helix 18
AB9
A
367 371Right-handed 310
Helix 19
AC1
A
375 390Right-handed alpha
Helix 20
AC2
A
400 407Right-handed alpha
Helix 21
AC3
A
410 435Right-handed alpha
Helix 22
AC4
A
488 498Right-handed alpha
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There are 3 sheets in PDB entry 5VPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 360first strand
Strand 2
A
328 333parallel
Strand 3
A
394 399parallel
Strand 4
A
11 16parallel
Strand 5
A
438 442parallel
Strand 6
A
468 473anti-parallel
Strand 7
A
47 51anti-parallel
Strand 8
A
484 485parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
242 244parallel
Strand 3
A
182 189anti-parallel
Strand 4
A
147 154parallel
Strand 5
A
115 121parallel
Strand 6
A
255 258parallel
Strand 7
A
291 296parallel
Strand 8
A
306 308parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 480first strand
Strand 2
A
511 513anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il