Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VPV entry

There are 4 chains in PDB entry 5VPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 13	GLY 639
A	ILE 641	THR 681
B	GLY 2	GLY 639
B	ILE 641	ARG 647

There are 72 helices in PDB entry 5VPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	57	59	Right-handed 310
Helix 4	AA4	A	62	75	Right-handed alpha
Helix 5	AA5	A	103	109	Right-handed alpha
Helix 6	AA6	A	109	116	Right-handed alpha
Helix 7	AA7	A	128	132	Right-handed 310
Helix 8	AA8	A	137	154	Right-handed alpha
Helix 9	AA9	A	170	182	Right-handed alpha
Helix 10	AB1	A	194	206	Right-handed alpha
Helix 11	AB2	A	224	234	Right-handed alpha
Helix 12	AB3	A	262	269	Right-handed alpha
Helix 13	AB4	A	303	318	Right-handed alpha
Helix 14	AB5	A	334	341	Right-handed alpha
Helix 15	AB6	A	342	348	Right-handed alpha
Helix 16	AB7	A	365	375	Right-handed alpha
Helix 17	AB8	A	382	393	Right-handed alpha
Helix 18	AB9	A	394	399	Right-handed alpha
Helix 19	AC1	A	416	427	Right-handed alpha
Helix 20	AC2	A	440	444	Right-handed 310
Helix 21	AC3	A	507	516	Right-handed alpha
Helix 22	AC4	A	556	564	Right-handed alpha
Helix 23	AC5	A	602	619	Right-handed alpha
Helix 24	AC6	A	620	623	Right-handed 310
Helix 25	AC7	A	642	652	Right-handed alpha
Helix 26	AC8	A	653	657	Right-handed 310
Helix 27	AC9	A	670	681	Right-handed alpha
Helix 28	AD1	B	30	34	Right-handed 310
Helix 29	AD2	B	47	58	Right-handed alpha
Helix 30	AD3	B	62	75	Right-handed alpha
Helix 31	AD4	B	103	109	Right-handed alpha
Helix 32	AD5	B	109	116	Right-handed alpha
Helix 33	AD6	B	128	132	Right-handed 310
Helix 34	AD7	B	137	154	Right-handed alpha
Helix 35	AD8	B	170	183	Right-handed alpha
Helix 36	AD9	B	194	205	Right-handed alpha
Helix 37	AE1	B	224	234	Right-handed alpha
Helix 38	AE2	B	262	267	Right-handed alpha
Helix 39	AE3	B	303	318	Right-handed alpha
Helix 40	AE4	B	334	341	Right-handed alpha
Helix 41	AE5	B	342	348	Right-handed alpha
Helix 42	AE6	B	365	375	Right-handed alpha
Helix 43	AE7	B	382	392	Right-handed alpha
Helix 44	AE8	B	393	397	Right-handed 310
Helix 45	AE9	B	416	427	Right-handed alpha
Helix 46	AF1	B	440	444	Right-handed 310
Helix 47	AF2	B	507	516	Right-handed alpha
Helix 48	AF3	B	556	564	Right-handed alpha
Helix 49	AF4	B	604	618	Right-handed alpha
Helix 50	AF5	B	619	623	Right-handed 310
Helix 51	AF6	B	642	652	Right-handed alpha
Helix 52	AF7	B	671	679	Right-handed alpha
Helix 53	AF8	C	30	34	Right-handed 310
Helix 54	AF9	C	47	56	Right-handed alpha
Helix 55	AG1	C	57	59	Right-handed 310
Helix 56	AG2	C	63	75	Right-handed alpha
Helix 57	AG3	C	103	109	Right-handed alpha
Helix 58	AG4	C	109	116	Right-handed alpha
Helix 59	AG5	C	128	132	Right-handed 310
Helix 60	AG6	C	137	154	Right-handed alpha
Helix 61	AG7	C	170	182	Right-handed alpha
Helix 62	AG8	C	194	205	Right-handed alpha
Helix 63	AG9	C	224	234	Right-handed alpha
Helix 64	AH1	C	262	269	Right-handed alpha
Helix 65	AH2	C	303	318	Right-handed alpha
Helix 66	AH3	C	334	341	Right-handed alpha
Helix 67	AH4	C	342	348	Right-handed alpha
Helix 68	AH5	C	365	375	Right-handed alpha
Helix 69	AH6	C	382	392	Right-handed alpha
Helix 70	AH7	C	416	427	Right-handed alpha
Helix 71	AH8	C	440	444	Right-handed 310
Helix 72	AH9	C	507	516	Right-handed alpha

There are 23 sheets in PDB entry 5VPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	95	96	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	278	279	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	120	125	anti-parallel
Strand 3	A	351	355	parallel
Strand 4	A	325	328	parallel
Strand 5	A	378	381	parallel
Strand 6	A	407	410	parallel
Strand 7	A	433	436	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	241	245	parallel
Strand 3	A	209	213	parallel
Strand 4	A	161	165	parallel
Strand 5	A	185	188	parallel
Strand 6	A	283	288	parallel
Strand 7	A	298	302	anti-parallel
Strand 8	A	503	504	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	221	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	474	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	523	531	anti-parallel
Strand 4	A	537	539	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	549	first strand
Strand 2	A	552	555	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	579	first strand
Strand 2	A	583	592	anti-parallel
Strand 3	A	626	629	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	11	13	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	95	96	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	278	279	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	136	first strand
Strand 2	B	120	125	anti-parallel
Strand 3	B	351	355	parallel
Strand 4	B	325	328	parallel
Strand 5	B	378	381	parallel
Strand 6	B	407	410	parallel
Strand 7	B	433	436	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	241	245	parallel
Strand 3	B	209	213	parallel
Strand 4	B	161	165	parallel
Strand 5	B	185	188	parallel
Strand 6	B	283	288	parallel
Strand 7	B	298	302	anti-parallel
Strand 8	B	503	504	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	221	223	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	474	first strand
Strand 2	B	487	493	anti-parallel
Strand 3	B	523	531	anti-parallel
Strand 4	B	537	540	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	549	first strand
Strand 2	B	552	555	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	579	first strand
Strand 2	B	583	592	anti-parallel
Strand 3	B	626	630	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	95	96	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	278	279	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	120	125	anti-parallel
Strand 3	C	351	355	parallel
Strand 4	C	325	328	parallel
Strand 5	C	378	381	parallel
Strand 6	C	407	411	parallel
Strand 7	C	433	437	parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	241	245	parallel
Strand 3	C	209	213	parallel
Strand 4	C	161	165	parallel
Strand 5	C	185	188	parallel
Strand 6	C	283	288	parallel
Strand 7	C	298	302	anti-parallel
Strand 8	C	503	504	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	221	223	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	474	first strand
Strand 2	C	487	493	anti-parallel
Strand 3	C	523	531	anti-parallel
Strand 4	C	537	542	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VPV