Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VQ3 entry

There are 4 chains in PDB entry 5VQ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4LYS 520
B
 MET 1ARG 458
C
 ASN 4LYS 520
D
 MET 1ARG 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 5VQ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
14 22Right-handed alpha
Helix 3
AA3
A
53 59Right-handed alpha
Helix 4
AA4
A
76 82Right-handed alpha
Helix 5
AA5
A
93 97Right-handed 310
Helix 6
AA6
A
111 118Right-handed alpha
Helix 7
AA7
A
119 135Right-handed alpha
Helix 8
AA8
A
153 166Right-handed alpha
Helix 9
AA9
A
181 197Right-handed alpha
Helix 10
AB1
A
217 219Right-handed 310
Helix 11
AB2
A
220 233Right-handed alpha
Helix 12
AB3
A
245 251Right-handed alpha
Helix 13
AB4
A
262 278Right-handed alpha
Helix 14
AB5
A
288 304Right-handed alpha
Helix 15
AB6
A
305 335Right-handed alpha
Helix 16
AB7
A
346 351Right-handed alpha
Helix 17
AB8
A
351 358Right-handed alpha
Helix 18
AB9
A
371 376Right-handed alpha
Helix 19
AC1
A
377 384Right-handed 310
Helix 20
AC2
A
410 420Right-handed alpha
Helix 21
AC3
A
429 434Right-handed alpha
Helix 22
AC4
A
445 457Right-handed alpha
Helix 23
AC5
A
464 474Right-handed alpha
Helix 24
AC6
A
483 487Right-handed 310
Helix 25
AC7
A
491 508Right-handed alpha
Helix 26
AC8
A
509 515Right-handed 310
Helix 27
AC9
B
23 34Right-handed alpha
Helix 28
AD1
B
45 61Right-handed alpha
Helix 29
AD2
B
74 79Right-handed alpha
Helix 30
AD3
B
80 95Right-handed alpha
Helix 31
AD4
B
105 112Right-handed alpha
Helix 32
AD5
B
114 126Right-handed alpha
Helix 33
AD6
B
145 162Right-handed alpha
Helix 34
AD7
B
180 195Right-handed alpha
Helix 35
AD8
B
225 232Right-handed alpha
Helix 36
AD9
B
233 235Right-handed 310
Helix 37
AE1
B
242 258Right-handed alpha
Helix 38
AE2
B
269 285Right-handed alpha
Helix 39
AE3
B
289 306Right-handed alpha
Helix 40
AE4
B
307 310Right-handed 310
Helix 41
AE5
B
320 334Right-handed alpha
Helix 42
AE6
B
347 361Right-handed alpha
Helix 43
AE7
B
373 384Right-handed alpha
Helix 44
AE8
B
392 394Right-handed 310
Helix 45
AE9
B
395 403Right-handed alpha
Helix 46
AF1
B
418 422Right-handed 310
Helix 47
AF2
B
425 449Right-handed alpha
Helix 48
AF3
B
450 454Right-handed 310
Helix 49
AF4
C
5 11Right-handed alpha
Helix 50
AF5
C
14 23Right-handed alpha
Helix 51
AF6
C
53 59Right-handed alpha
Helix 52
AF7
C
76 82Right-handed alpha
Helix 53
AF8
C
93 97Right-handed 310
Helix 54
AF9
C
111 118Right-handed alpha
Helix 55
AG1
C
119 135Right-handed alpha
Helix 56
AG2
C
153 166Right-handed alpha
Helix 57
AG3
C
181 197Right-handed alpha
Helix 58
AG4
C
217 219Right-handed 310
Helix 59
AG5
C
220 233Right-handed alpha
Helix 60
AG6
C
245 251Right-handed alpha
Helix 61
AG7
C
262 278Right-handed alpha
Helix 62
AG8
C
288 304Right-handed alpha
Helix 63
AG9
C
305 335Right-handed alpha
Helix 64
AH1
C
346 351Right-handed alpha
Helix 65
AH2
C
351 358Right-handed alpha
Helix 66
AH3
C
371 377Right-handed alpha
Helix 67
AH4
C
378 384Right-handed 310
Helix 68
AH5
C
410 420Right-handed alpha
Helix 69
AH6
C
429 434Right-handed alpha
Helix 70
AH7
C
445 457Right-handed alpha
Helix 71
AH8
C
464 474Right-handed alpha
Helix 72
AH9
C
483 487Right-handed 310
Helix 73
AI1
C
491 508Right-handed alpha
Helix 74
AI2
C
509 514Right-handed 310
Helix 75
AI3
D
23 34Right-handed alpha
Helix 76
AI4
D
45 61Right-handed alpha
Helix 77
AI5
D
72 79Right-handed alpha
Helix 78
AI6
D
80 96Right-handed alpha
Helix 79
AI7
D
105 112Right-handed alpha
Helix 80
AI8
D
114 125Right-handed alpha
Helix 81
AI9
D
145 162Right-handed alpha
Helix 82
AJ1
D
180 194Right-handed alpha
Helix 83
AJ2
D
225 232Right-handed alpha
Helix 84
AJ3
D
233 235Right-handed 310
Helix 85
AJ4
D
242 258Right-handed alpha
Helix 86
AJ5
D
269 285Right-handed alpha
Helix 87
AJ6
D
289 306Right-handed alpha
Helix 88
AJ7
D
307 310Right-handed 310
Helix 89
AJ8
D
320 334Right-handed alpha
Helix 90
AJ9
D
347 361Right-handed alpha
Helix 91
AK1
D
373 384Right-handed alpha
Helix 92
AK2
D
392 394Right-handed 310
Helix 93
AK3
D
395 403Right-handed alpha
Helix 94
AK4
D
418 422Right-handed 310
Helix 95
AK5
D
425 449Right-handed alpha
Helix 96
AK6
D
450 454Right-handed 310
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There are 12 sheets in PDB entry 5VQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
439 442anti-parallel
Strand 3
A
361 367parallel
Strand 4
A
338 343parallel
Strand 5
A
460 462parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
138 143parallel
Strand 3
A
69 74parallel
Strand 4
A
106 107parallel
Strand 5
B
16 17anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 241first strand
Strand 2
A
209 215parallel
Strand 3
A
257 260parallel
Strand 4
A
281 283parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
38 43parallel
Strand 3
B
99 104parallel
Strand 4
B
133 136parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
172 175parallel
Strand 3
B
237 241parallel
Strand 4
B
261 264parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 370first strand
Strand 2
B
337 343parallel
Strand 3
B
314 318parallel
Strand 4
B
388 391parallel
Strand 5
B
406 408parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 27first strand
Strand 2
C
439 442anti-parallel
Strand 3
C
361 367parallel
Strand 4
C
338 343parallel
Strand 5
C
460 462parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 172first strand
Strand 2
C
138 143parallel
Strand 3
C
69 74parallel
Strand 4
C
106 107parallel
Strand 5
D
16 17anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
235 241first strand
Strand 2
C
209 215parallel
Strand 3
C
257 260parallel
Strand 4
C
281 283parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 68first strand
Strand 2
D
38 43parallel
Strand 3
D
99 104parallel
Strand 4
D
133 136parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 200first strand
Strand 2
D
172 175parallel
Strand 3
D
237 241parallel
Strand 4
D
261 264parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
367 370first strand
Strand 2
D
337 343parallel
Strand 3
D
314 318parallel
Strand 4
D
388 391parallel
Strand 5
D
406 408parallel
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