Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VQB entry

There are 3 chains in PDB entry 5VQB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 474
B	MET 1	THR 474
C	MET 1	ASP 394

There are 44 helices in PDB entry 5VQB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	46	55	Right-handed alpha
Helix 3	AA3	A	58	65	Right-handed alpha
Helix 4	AA4	A	97	112	Right-handed alpha
Helix 5	AA5	A	155	160	Right-handed alpha
Helix 6	AA6	A	184	196	Right-handed alpha
Helix 7	AA7	A	230	242	Right-handed alpha
Helix 8	AA8	A	276	278	Right-handed 310
Helix 9	AA9	A	288	309	Right-handed alpha
Helix 10	AB1	A	317	342	Right-handed alpha
Helix 11	AB2	A	345	359	Right-handed alpha
Helix 12	AB3	A	361	373	Right-handed alpha
Helix 13	AB4	A	402	406	Right-handed 310
Helix 14	AB5	A	458	466	Right-handed alpha
Helix 15	AB6	A	466	471	Right-handed alpha
Helix 16	AB7	B	10	22	Right-handed alpha
Helix 17	AB8	B	46	56	Right-handed alpha
Helix 18	AB9	B	58	65	Right-handed alpha
Helix 19	AC1	B	97	112	Right-handed alpha
Helix 20	AC2	B	155	161	Right-handed alpha
Helix 21	AC3	B	187	196	Right-handed alpha
Helix 22	AC4	B	231	241	Right-handed alpha
Helix 23	AC5	B	276	278	Right-handed 310
Helix 24	AC6	B	288	309	Right-handed alpha
Helix 25	AC7	B	318	342	Right-handed alpha
Helix 26	AC8	B	345	359	Right-handed alpha
Helix 27	AC9	B	361	373	Right-handed alpha
Helix 28	AD1	B	401	409	Right-handed 310
Helix 29	AD2	B	458	466	Right-handed alpha
Helix 30	AD3	B	466	471	Right-handed alpha
Helix 31	AD4	C	10	22	Right-handed alpha
Helix 32	AD5	C	46	56	Right-handed alpha
Helix 33	AD6	C	58	64	Right-handed alpha
Helix 34	AD7	C	97	112	Right-handed alpha
Helix 35	AD8	C	156	162	Right-handed alpha
Helix 36	AD9	C	186	196	Right-handed alpha
Helix 37	AE1	C	230	241	Right-handed alpha
Helix 38	AE2	C	276	279	Right-handed 310
Helix 39	AE3	C	288	308	Right-handed alpha
Helix 40	AE4	C	318	342	Right-handed alpha
Helix 41	AE5	C	345	359	Right-handed alpha
Helix 42	AE6	C	361	373	Right-handed alpha
Helix 43	AE7	C	402	406	Right-handed 310
Helix 44	AE8	C	458	471	Right-handed alpha

There are 18 sheets in PDB entry 5VQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	27	31	parallel
Strand 3	A	2	7	parallel
Strand 4	A	141	149	parallel
Strand 5	A	132	136	anti-parallel
Strand 6	A	122	127	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	27	31	parallel
Strand 3	A	2	7	parallel
Strand 4	A	141	149	parallel
Strand 5	A	272	274	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	93	95	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	261	263	anti-parallel
Strand 3	A	280	281	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	206	first strand
Strand 2	A	212	217	anti-parallel
Strand 3	A	174	179	anti-parallel
Strand 4	A	253	257	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	415	first strand
Strand 2	A	443	446	anti-parallel
Strand 3	A	452	456	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	27	31	parallel
Strand 3	B	2	7	parallel
Strand 4	B	141	149	parallel
Strand 5	B	132	136	anti-parallel
Strand 6	B	122	127	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	27	31	parallel
Strand 3	B	2	7	parallel
Strand 4	B	141	149	parallel
Strand 5	B	272	274	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	93	95	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	261	263	anti-parallel
Strand 3	B	280	281	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	217	first strand
Strand 2	B	174	177	anti-parallel
Strand 3	B	255	257	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	433	first strand
Strand 2	B	412	415	parallel
Strand 3	B	443	446	anti-parallel
Strand 4	B	452	456	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	118	first strand
Strand 2	C	27	31	parallel
Strand 3	C	4	7	parallel
Strand 4	C	146	149	parallel
Strand 5	C	272	274	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	C	93	95	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	127	first strand
Strand 2	C	132	136	anti-parallel
Strand 3	C	141	144	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	261	262	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	206	first strand
Strand 2	C	212	217	anti-parallel
Strand 3	C	174	178	anti-parallel
Strand 4	C	253	257	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	432	first strand
Strand 2	C	411	415	parallel
Strand 3	C	443	446	anti-parallel
Strand 4	C	452	456	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VQB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQB