Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VQD entry

There is 1 chain in PDB entry 5VQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5VQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
14 28Right-handed alpha
Helix 3
AA3
A
29 37Right-handed alpha
Helix 4
AA4
A
68 83Right-handed alpha
Helix 5
AA5
A
112 119Right-handed alpha
Helix 6
AA6
A
121 139Right-handed alpha
Helix 7
AA7
A
160 164Right-handed 310
Helix 8
AA8
A
168 185Right-handed alpha
Helix 9
AA9
A
215 222Right-handed alpha
Helix 10
AB1
A
222 234Right-handed alpha
Helix 11
AB2
A
245 253Right-handed alpha
Helix 12
AB3
A
263 266Right-handed 310
Helix 13
AB4
A
267 272Right-handed alpha
Helix 14
AB5
A
292 297Right-handed alpha
Helix 15
AB6
A
300 311Right-handed alpha
Helix 16
AB7
A
321 336Right-handed alpha
Helix 17
AB8
A
339 357Right-handed alpha
Helix 18
AB9
A
368 375Right-handed 310
Helix 19
AC1
A
377 392Right-handed alpha
Helix 20
AC2
A
428 442Right-handed alpha
Helix 21
AC3
A
449 451Right-handed 310
Helix 22
AC4
A
459 467Right-handed alpha
Helix 23
AC5
A
515 519Right-handed 310
Helix 24
AC6
A
533 545Right-handed alpha
Helix 25
AC7
A
562 566Right-handed 310
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There are 2 sheets in PDB entry 5VQD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
88 91parallel
Strand 3
A
61 64parallel
Strand 4
A
38 42parallel
Strand 5
A
315 317parallel
Strand 6
A
284 289parallel
Strand 7
A
237 240parallel
Strand 8
A
191 195parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 397first strand
Strand 2
A
525 528anti-parallel
Strand 3
A
506 510parallel
Strand 4
A
469 475parallel
Strand 5
A
412 419parallel
Strand 6
A
444 447parallel
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