Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VQE entry

There is 1 chain in PDB entry 5VQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 5VQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
14 28Right-handed alpha
Helix 3
AA3
A
29 37Right-handed alpha
Helix 4
AA4
A
49 55Right-handed 310
Helix 5
AA5
A
68 83Right-handed alpha
Helix 6
AA6
A
112 119Right-handed alpha
Helix 7
AA7
A
121 139Right-handed alpha
Helix 8
AA8
A
160 164Right-handed 310
Helix 9
AA9
A
168 185Right-handed alpha
Helix 10
AB1
A
215 222Right-handed alpha
Helix 11
AB2
A
222 233Right-handed alpha
Helix 12
AB3
A
245 253Right-handed alpha
Helix 13
AB4
A
257 261Right-handed 310
Helix 14
AB5
A
263 266Right-handed 310
Helix 15
AB6
A
267 272Right-handed alpha
Helix 16
AB7
A
292 297Right-handed alpha
Helix 17
AB8
A
300 311Right-handed alpha
Helix 18
AB9
A
321 335Right-handed alpha
Helix 19
AC1
A
339 357Right-handed alpha
Helix 20
AC2
A
368 375Right-handed 310
Helix 21
AC3
A
377 392Right-handed alpha
Helix 22
AC4
A
428 442Right-handed alpha
Helix 23
AC5
A
449 451Right-handed 310
Helix 24
AC6
A
459 467Right-handed alpha
Helix 25
AC7
A
515 519Right-handed 310
Helix 26
AC8
A
533 545Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5VQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
88 91parallel
Strand 3
A
61 64parallel
Strand 4
A
38 42parallel
Strand 5
A
316 317parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
237 240parallel
Strand 3
A
284 287parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
243 244parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 397first strand
Strand 2
A
525 528anti-parallel
Strand 3
A
506 510parallel
Strand 4
A
469 475parallel
Strand 5
A
412 419parallel
Strand 6
A
444 447parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il