Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VQF entry

There are 4 chains in PDB entry 5VQF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	SER 361
B	LEU 1	SER 361
C	LEU 1	SER 361
D	PRO 0	GLY 278

There are 32 helices in PDB entry 5VQF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	28	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	108	115	Right-handed alpha
Helix 4	AA4	A	117	119	Right-handed 310
Helix 5	AA5	A	171	181	Right-handed alpha
Helix 6	AA6	A	235	239	Right-handed 310
Helix 7	AA7	A	253	257	Right-handed alpha
Helix 8	AA8	A	299	303	Right-handed 310
Helix 9	AA9	A	307	312	Right-handed alpha
Helix 10	AB1	A	313	317	Right-handed 310
Helix 11	AB2	B	2	28	Right-handed alpha
Helix 12	AB3	B	45	57	Right-handed alpha
Helix 13	AB4	B	108	115	Right-handed alpha
Helix 14	AB5	B	117	119	Right-handed 310
Helix 15	AB6	B	171	181	Right-handed alpha
Helix 16	AB7	C	2	28	Right-handed alpha
Helix 17	AB8	C	45	57	Right-handed alpha
Helix 18	AB9	C	108	115	Right-handed alpha
Helix 19	AC1	C	117	119	Right-handed 310
Helix 20	AC2	C	171	181	Right-handed alpha
Helix 21	AC3	C	253	257	Right-handed alpha
Helix 22	AC4	C	307	312	Right-handed alpha
Helix 23	AC5	C	313	317	Right-handed 310
Helix 24	AC6	C	318	322	Right-handed 310
Helix 25	AC7	D	4	28	Right-handed alpha
Helix 26	AC8	D	45	57	Right-handed alpha
Helix 27	AC9	D	108	115	Right-handed alpha
Helix 28	AD1	D	117	119	Right-handed 310
Helix 29	AD2	D	171	181	Right-handed alpha
Helix 30	AD3	D	235	239	Right-handed 310
Helix 31	AD4	D	306	313	Right-handed alpha
Helix 32	AD5	D	314	316	Right-handed 310

There are 22 sheets in PDB entry 5VQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	165	170	parallel
Strand 3	A	121	130	anti-parallel
Strand 4	A	228	233	anti-parallel
Strand 5	A	77	83	anti-parallel
Strand 6	B	344	355	anti-parallel
Strand 7	B	332	341	anti-parallel
Strand 8	B	282	284	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	107	first strand
Strand 2	A	185	192	anti-parallel
Strand 3	A	137	143	anti-parallel
Strand 4	A	151	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	202	206	anti-parallel
Strand 3	D	202	207	anti-parallel
Strand 4	D	194	199	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	357	361	anti-parallel
Strand 3	A	326	329	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	292	294	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	287	289	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	332	341	anti-parallel
Strand 3	A	344	355	anti-parallel
Strand 4	B	77	83	anti-parallel
Strand 5	B	228	233	anti-parallel
Strand 6	B	121	130	anti-parallel
Strand 7	B	165	170	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	107	first strand
Strand 2	B	185	192	anti-parallel
Strand 3	B	137	143	anti-parallel
Strand 4	B	151	158	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	199	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	C	202	207	anti-parallel
Strand 4	C	194	199	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	292	294	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	287	289	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	358	361	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	170	first strand
Strand 2	C	121	130	anti-parallel
Strand 3	C	228	233	anti-parallel
Strand 4	C	77	83	anti-parallel
Strand 5	D	344	355	anti-parallel
Strand 6	D	332	341	anti-parallel
Strand 7	D	282	284	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	107	first strand
Strand 2	C	185	192	anti-parallel
Strand 3	C	137	144	anti-parallel
Strand 4	C	150	158	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	357	360	anti-parallel
Strand 3	C	327	329	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	292	294	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	287	289	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	332	341	anti-parallel
Strand 3	C	344	355	anti-parallel
Strand 4	D	77	83	anti-parallel
Strand 5	D	228	233	anti-parallel
Strand 6	D	121	130	anti-parallel
Strand 7	D	165	170	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	107	first strand
Strand 2	D	185	192	anti-parallel
Strand 3	D	137	143	anti-parallel
Strand 4	D	151	158	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	267	first strand
Strand 2	D	292	294	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	287	289	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	358	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VQF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQF