Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VQH entry

There are 2 chains in PDB entry 5VQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -8VAL 216
B
 ALA -1ALA 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5VQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 40Right-handed alpha
Helix 2
AA2
A
41 47Right-handed alpha
Helix 3
AA3
A
105 107Right-handed 310
Helix 4
AA4
A
111 116Right-handed 310
Helix 5
AA5
A
149 160Right-handed alpha
Helix 6
AA6
A
205 212Right-handed alpha
Helix 7
AA7
B
23 41Right-handed alpha
Helix 8
AA8
B
41 47Right-handed alpha
Helix 9
AA9
B
105 107Right-handed 310
Helix 10
AB1
B
111 116Right-handed 310
Helix 11
AB2
B
149 161Right-handed alpha
Helix 12
AB3
B
205 212Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5VQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-7 -5first strand
Strand 2
A
167 178anti-parallel
Strand 3
A
3 12anti-parallel
Strand 4
A
15 20anti-parallel
Strand 5
A
122 126anti-parallel
Strand 6
A
187 197parallel
Strand 7
A
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-7 -5first strand
Strand 2
A
167 178anti-parallel
Strand 3
A
187 197anti-parallel
Strand 4
A
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
69 78anti-parallel
Strand 4
A
58 62anti-parallel
Strand 5
A
108 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
215 216anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
189 197anti-parallel
Strand 3
B
167 176anti-parallel
Strand 4
B
3 12anti-parallel
Strand 5
B
15 20anti-parallel
Strand 6
B
122 126anti-parallel
Strand 7
B
189 197parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
87 93anti-parallel
Strand 3
B
69 79anti-parallel
Strand 4
B
58 62anti-parallel
Strand 5
B
108 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
215 216anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il