Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VQI entry

There are 3 chains in PDB entry 5VQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 82SER 507
A
 SER 918ARG 924
C
 SER 918ARG 923
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5VQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
82 92Right-handed alpha
Helix 2
AA2
B
94 109Right-handed alpha
Helix 3
AA3
B
116 123Right-handed alpha
Helix 4
AA4
B
125 133Right-handed alpha
Helix 5
AA5
B
137 152Right-handed alpha
Helix 6
AA6
B
155 165Right-handed alpha
Helix 7
AA7
B
167 175Right-handed alpha
Helix 8
AA8
B
179 195Right-handed alpha
Helix 9
AA9
B
197 207Right-handed alpha
Helix 10
AB1
B
209 220Right-handed alpha
Helix 11
AB2
B
222 238Right-handed alpha
Helix 12
AB3
B
245 250Right-handed alpha
Helix 13
AB4
B
251 260Right-handed alpha
Helix 14
AB5
B
264 280Right-handed alpha
Helix 15
AB6
B
282 292Right-handed alpha
Helix 16
AB7
B
294 302Right-handed alpha
Helix 17
AB8
B
306 321Right-handed alpha
Helix 18
AB9
B
324 334Right-handed alpha
Helix 19
AC1
B
335 344Right-handed alpha
Helix 20
AC2
B
348 363Right-handed alpha
Helix 21
AC3
B
366 376Right-handed alpha
Helix 22
AC4
B
378 386Right-handed alpha
Helix 23
AC5
B
390 404Right-handed alpha
Helix 24
AC6
B
412 421Right-handed alpha
Helix 25
AC7
B
423 430Right-handed alpha
Helix 26
AC8
B
431 433Right-handed 310
Helix 27
AC9
B
435 459Right-handed alpha
Helix 28
AD1
B
468 477Right-handed alpha
Helix 29
AD2
B
478 485Right-handed alpha
Helix 30
AD3
B
486 489Right-handed 310
Helix 31
AD4
B
491 506Right-handed alpha
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There are no sheets in PDB entry 5VQI
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il