Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VQJ entry

There is 1 chain in PDB entry 5VQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASP 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 5VQJ. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 176Right-handed alpha
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There are 2 sheets in PDB entry 5VQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
29 33anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
63 71anti-parallel
Strand 6
A
162 165anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
195 202anti-parallel
Strand 5
A
76 84anti-parallel
Strand 6
A
96 105anti-parallel
Strand 7
A
143 152parallel
Strand 8
A
124 136anti-parallel
Strand 9
A
114 121anti-parallel
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