Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VQP entry

There is 1 chain in PDB entry 5VQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3SER 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5VQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 29Right-handed alpha
Helix 2
AA2
A
45 57Right-handed alpha
Helix 3
AA3
A
108 115Right-handed alpha
Helix 4
AA4
A
117 119Right-handed 310
Helix 5
AA5
A
171 181Right-handed alpha
Helix 6
AA6
A
235 240Right-handed alpha
Helix 7
AA7
A
255 260Right-handed alpha
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There are 5 sheets in PDB entry 5VQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
165 170anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
185 199anti-parallel
Strand 3
A
137 145anti-parallel
Strand 4
A
149 158anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
185 199anti-parallel
Strand 3
A
202 208anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 272first strand
Strand 2
A
287 294anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
326 341anti-parallel
Strand 3
A
344 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il