Analysis of interatomic Contacts of Structural Units in PDB entry:
5VR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VR8 entry

There are 3 chains in PDB entry 5VR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 465
B	HIS 0	LYS 465
C	HIS 0	ASP 359

There are120 helices in PDB entry 5VR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	27	Right-handed alpha
Helix 2	AA2	A	38	46	Right-handed alpha
Helix 3	AA3	A	56	65	Right-handed alpha
Helix 4	AA4	A	74	82	Right-handed alpha
Helix 5	AA5	A	106	119	Right-handed alpha
Helix 6	AA6	A	135	147	Right-handed alpha
Helix 7	AA7	A	167	174	Right-handed alpha
Helix 8	AA8	A	185	200	Right-handed alpha
Helix 9	AA9	A	204	206	Right-handed 310
Helix 10	AB1	A	212	245	Right-handed alpha
Helix 11	AB2	A	247	257	Right-handed alpha
Helix 12	AB3	A	276	291	Right-handed alpha
Helix 13	AB4	A	293	322	Right-handed alpha
Helix 14	AB5	A	348	359	Right-handed alpha
Helix 15	AB6	A	372	381	Right-handed alpha
Helix 16	AB7	A	389	394	Right-handed alpha
Helix 17	AB8	A	400	406	Right-handed alpha
Helix 18	AB9	A	417	423	Right-handed 310
Helix 19	AC1	A	424	432	Right-handed alpha
Helix 20	AC2	A	448	456	Right-handed alpha
Helix 21	AC3	B	15	27	Right-handed alpha
Helix 22	AC4	B	38	46	Right-handed alpha
Helix 23	AC5	B	56	65	Right-handed alpha
Helix 24	AC6	B	74	82	Right-handed alpha
Helix 25	AC7	B	106	119	Right-handed alpha
Helix 26	AC8	B	135	147	Right-handed alpha
Helix 27	AC9	B	167	174	Right-handed alpha
Helix 28	AD1	B	185	200	Right-handed alpha
Helix 29	AD2	B	204	206	Right-handed 310
Helix 30	AD3	B	212	245	Right-handed alpha
Helix 31	AD4	B	247	257	Right-handed alpha
Helix 32	AD5	B	276	291	Right-handed alpha
Helix 33	AD6	B	293	322	Right-handed alpha
Helix 34	AD7	B	348	359	Right-handed alpha
Helix 35	AD8	B	372	381	Right-handed alpha
Helix 36	AD9	B	390	394	Right-handed alpha
Helix 37	AE1	B	400	406	Right-handed alpha
Helix 38	AE2	B	417	423	Right-handed 310
Helix 39	AE3	B	424	432	Right-handed alpha
Helix 40	AE4	B	448	456	Right-handed alpha
Helix 41	AE5	C	15	27	Right-handed alpha
Helix 42	AE6	C	38	46	Right-handed alpha
Helix 43	AE7	C	56	65	Right-handed alpha
Helix 44	AE8	C	74	82	Right-handed alpha
Helix 45	AE9	C	106	120	Right-handed alpha
Helix 46	AF1	C	135	147	Right-handed alpha
Helix 47	AF2	C	167	174	Right-handed alpha
Helix 48	AF3	C	185	200	Right-handed alpha
Helix 49	AF4	C	204	206	Right-handed 310
Helix 50	AF5	C	212	245	Right-handed alpha
Helix 51	AF6	C	247	257	Right-handed alpha
Helix 52	AF7	C	276	291	Right-handed alpha
Helix 53	AF8	C	293	322	Right-handed alpha
Helix 54	AF9	C	348	359	Right-handed alpha
Helix 55	AG1	C	372	381	Right-handed alpha
Helix 56	AG2	C	388	394	Right-handed alpha
Helix 57	AG3	C	400	406	Right-handed alpha
Helix 58	AG4	C	417	423	Right-handed 310
Helix 59	AG5	C	424	432	Right-handed alpha
Helix 60	AG6	C	448	456	Right-handed alpha
Helix 61	AG7	D	15	27	Right-handed alpha
Helix 62	AG8	D	38	46	Right-handed alpha
Helix 63	AG9	D	56	65	Right-handed alpha
Helix 64	AH1	D	74	82	Right-handed alpha
Helix 65	AH2	D	106	119	Right-handed alpha
Helix 66	AH3	D	135	147	Right-handed alpha
Helix 67	AH4	D	167	174	Right-handed alpha
Helix 68	AH5	D	185	200	Right-handed alpha
Helix 69	AH6	D	204	206	Right-handed 310
Helix 70	AH7	D	212	245	Right-handed alpha
Helix 71	AH8	D	247	257	Right-handed alpha
Helix 72	AH9	D	276	291	Right-handed alpha
Helix 73	AI1	D	293	322	Right-handed alpha
Helix 74	AI2	D	348	360	Right-handed alpha
Helix 75	AI3	D	372	381	Right-handed alpha
Helix 76	AI4	D	390	394	Right-handed alpha
Helix 77	AI5	D	400	406	Right-handed alpha
Helix 78	AI6	D	417	423	Right-handed 310
Helix 79	AI7	D	424	432	Right-handed alpha
Helix 80	AI8	D	448	456	Right-handed alpha
Helix 81	AI9	E	15	27	Right-handed alpha
Helix 82	AJ1	E	38	46	Right-handed alpha
Helix 83	AJ2	E	56	65	Right-handed alpha
Helix 84	AJ3	E	74	82	Right-handed alpha
Helix 85	AJ4	E	106	119	Right-handed alpha
Helix 86	AJ5	E	135	147	Right-handed alpha
Helix 87	AJ6	E	167	174	Right-handed alpha
Helix 88	AJ7	E	185	200	Right-handed alpha
Helix 89	AJ8	E	204	206	Right-handed 310
Helix 90	AJ9	E	212	245	Right-handed alpha
Helix 91	AK1	E	247	257	Right-handed alpha
Helix 92	AK2	E	276	291	Right-handed alpha
Helix 93	AK3	E	293	322	Right-handed alpha
Helix 94	AK4	E	348	360	Right-handed alpha
Helix 95	AK5	E	372	381	Right-handed alpha
Helix 96	AK6	E	390	394	Right-handed alpha
Helix 97	AK7	E	400	406	Right-handed alpha
Helix 98	AK8	E	417	422	Right-handed alpha
Helix 99	AK9	E	424	432	Right-handed alpha
Helix 100	AL1	E	448	456	Right-handed alpha
Helix 101	AL2	F	15	27	Right-handed alpha
Helix 102	AL3	F	38	46	Right-handed alpha
Helix 103	AL4	F	56	65	Right-handed alpha
Helix 104	AL5	F	74	82	Right-handed alpha
Helix 105	AL6	F	106	119	Right-handed alpha
Helix 106	AL7	F	135	147	Right-handed alpha
Helix 107	AL8	F	167	174	Right-handed alpha
Helix 108	AL9	F	185	200	Right-handed alpha
Helix 109	AM1	F	204	206	Right-handed 310
Helix 110	AM2	F	212	245	Right-handed alpha
Helix 111	AM3	F	247	257	Right-handed alpha
Helix 112	AM4	F	276	291	Right-handed alpha
Helix 113	AM5	F	293	322	Right-handed alpha
Helix 114	AM6	F	348	360	Right-handed alpha
Helix 115	AM7	F	372	381	Right-handed alpha
Helix 116	AM8	F	390	394	Right-handed alpha
Helix 117	AM9	F	400	406	Right-handed alpha
Helix 118	AN1	F	417	423	Right-handed 310
Helix 119	AN2	F	424	432	Right-handed alpha
Helix 120	AN3	F	448	456	Right-handed alpha

There are 18 sheets in PDB entry 5VR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	31	35	parallel
Strand 3	A	6	10	parallel
Strand 4	A	84	87	parallel
Strand 5	A	123	128	parallel
Strand 6	A	153	158	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	208	211	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	363	367	parallel
Strand 3	A	330	334	parallel
Strand 4	A	410	413	parallel
Strand 5	A	437	440	parallel
Strand 6	A	458	461	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	31	35	parallel
Strand 3	B	6	10	parallel
Strand 4	B	84	87	parallel
Strand 5	B	123	128	parallel
Strand 6	B	153	158	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	208	211	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	363	367	parallel
Strand 3	B	330	334	parallel
Strand 4	B	410	413	parallel
Strand 5	B	437	440	parallel
Strand 6	B	458	461	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	31	35	parallel
Strand 3	C	6	10	parallel
Strand 4	C	84	87	parallel
Strand 5	C	123	128	parallel
Strand 6	C	153	158	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	208	211	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	363	367	parallel
Strand 3	C	330	334	parallel
Strand 4	C	410	413	parallel
Strand 5	C	437	440	parallel
Strand 6	C	458	461	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	31	35	parallel
Strand 3	D	6	10	parallel
Strand 4	D	84	87	parallel
Strand 5	D	123	128	parallel
Strand 6	D	153	158	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	181	first strand
Strand 2	D	208	211	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	363	367	parallel
Strand 3	D	330	334	parallel
Strand 4	D	410	413	parallel
Strand 5	D	437	440	parallel
Strand 6	D	458	461	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	31	35	parallel
Strand 3	E	6	10	parallel
Strand 4	E	84	87	parallel
Strand 5	E	123	128	parallel
Strand 6	E	153	158	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	181	first strand
Strand 2	E	208	211	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	395	397	first strand
Strand 2	E	363	367	parallel
Strand 3	E	330	334	parallel
Strand 4	E	410	413	parallel
Strand 5	E	437	440	parallel
Strand 6	E	458	461	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	72	first strand
Strand 2	F	31	35	parallel
Strand 3	F	6	10	parallel
Strand 4	F	84	87	parallel
Strand 5	F	123	128	parallel
Strand 6	F	153	158	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	208	211	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	395	397	first strand
Strand 2	F	363	367	parallel
Strand 3	F	330	334	parallel
Strand 4	F	410	413	parallel
Strand 5	F	437	440	parallel
Strand 6	F	458	461	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VR8