Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VRB entry

There are 5 chains in PDB entry 5VRB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLY 153
A	LEU 155	LEU 659
B	SER 2	GLY 153
B	LEU 155	LEU 659
C	SER 2	LEU 42

There are132 helices in PDB entry 5VRB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	20	Right-handed alpha
Helix 2	AA2	A	24	30	Right-handed alpha
Helix 3	AA3	A	30	41	Right-handed alpha
Helix 4	AA4	A	61	63	Right-handed 310
Helix 5	AA5	A	64	76	Right-handed alpha
Helix 6	AA6	A	80	85	Right-handed alpha
Helix 7	AA7	A	114	135	Right-handed alpha
Helix 8	AA8	A	151	157	Right-handed alpha
Helix 9	AA9	A	157	170	Right-handed alpha
Helix 10	AB1	A	197	205	Right-handed alpha
Helix 11	AB2	A	217	231	Right-handed alpha
Helix 12	AB3	A	269	274	Right-handed alpha
Helix 13	AB4	A	284	292	Right-handed alpha
Helix 14	AB5	A	293	315	Right-handed alpha
Helix 15	AB6	A	315	327	Right-handed alpha
Helix 16	AB7	A	333	349	Right-handed alpha
Helix 17	AB8	A	354	369	Right-handed alpha
Helix 18	AB9	A	379	384	Right-handed alpha
Helix 19	AC1	A	407	422	Right-handed alpha
Helix 20	AC2	A	433	437	Right-handed 310
Helix 21	AC3	A	438	449	Right-handed alpha
Helix 22	AC4	A	460	464	Right-handed 310
Helix 23	AC5	A	474	480	Right-handed alpha
Helix 24	AC6	A	492	506	Right-handed alpha
Helix 25	AC7	A	526	533	Right-handed alpha
Helix 26	AC8	A	534	536	Right-handed 310
Helix 27	AC9	A	557	571	Right-handed alpha
Helix 28	AD1	A	582	588	Right-handed alpha
Helix 29	AD2	A	590	598	Right-handed alpha
Helix 30	AD3	A	612	614	Right-handed 310
Helix 31	AD4	A	615	620	Right-handed alpha
Helix 32	AD5	A	636	644	Right-handed alpha
Helix 33	AD6	A	647	658	Right-handed alpha
Helix 34	AD7	B	3	20	Right-handed alpha
Helix 35	AD8	B	24	30	Right-handed alpha
Helix 36	AD9	B	30	41	Right-handed alpha
Helix 37	AE1	B	61	63	Right-handed 310
Helix 38	AE2	B	64	76	Right-handed alpha
Helix 39	AE3	B	80	85	Right-handed alpha
Helix 40	AE4	B	114	135	Right-handed alpha
Helix 41	AE5	B	152	157	Right-handed alpha
Helix 42	AE6	B	157	170	Right-handed alpha
Helix 43	AE7	B	191	193	Right-handed 310
Helix 44	AE8	B	197	205	Right-handed alpha
Helix 45	AE9	B	217	231	Right-handed alpha
Helix 46	AF1	B	254	258	Right-handed 310
Helix 47	AF2	B	263	275	Right-handed alpha
Helix 48	AF3	B	284	292	Right-handed alpha
Helix 49	AF4	B	293	315	Right-handed alpha
Helix 50	AF5	B	315	327	Right-handed alpha
Helix 51	AF6	B	333	348	Right-handed alpha
Helix 52	AF7	B	360	369	Right-handed alpha
Helix 53	AF8	B	407	422	Right-handed alpha
Helix 54	AF9	B	433	437	Right-handed 310
Helix 55	AG1	B	438	449	Right-handed alpha
Helix 56	AG2	B	460	464	Right-handed 310
Helix 57	AG3	B	474	480	Right-handed alpha
Helix 58	AG4	B	492	506	Right-handed alpha
Helix 59	AG5	B	526	533	Right-handed alpha
Helix 60	AG6	B	534	536	Right-handed 310
Helix 61	AG7	B	557	571	Right-handed alpha
Helix 62	AG8	B	582	587	Right-handed alpha
Helix 63	AG9	B	590	598	Right-handed alpha
Helix 64	AH1	B	612	614	Right-handed 310
Helix 65	AH2	B	615	620	Right-handed alpha
Helix 66	AH3	B	636	644	Right-handed alpha
Helix 67	AH4	B	647	658	Right-handed alpha
Helix 68	AH5	C	3	20	Right-handed alpha
Helix 69	AH6	C	24	30	Right-handed alpha
Helix 70	AH7	C	30	41	Right-handed alpha
Helix 71	AH8	C	61	63	Right-handed 310
Helix 72	AH9	C	64	76	Right-handed alpha
Helix 73	AI1	C	80	86	Right-handed alpha
Helix 74	AI2	C	114	135	Right-handed alpha
Helix 75	AI3	C	151	157	Right-handed alpha
Helix 76	AI4	C	157	170	Right-handed alpha
Helix 77	AI5	C	197	205	Right-handed alpha
Helix 78	AI6	C	217	231	Right-handed alpha
Helix 79	AI7	C	268	274	Right-handed alpha
Helix 80	AI8	C	284	292	Right-handed alpha
Helix 81	AI9	C	293	315	Right-handed alpha
Helix 82	AJ1	C	315	327	Right-handed alpha
Helix 83	AJ2	C	333	348	Right-handed alpha
Helix 84	AJ3	C	361	369	Right-handed alpha
Helix 85	AJ4	C	407	422	Right-handed alpha
Helix 86	AJ5	C	433	437	Right-handed 310
Helix 87	AJ6	C	438	449	Right-handed alpha
Helix 88	AJ7	C	460	464	Right-handed 310
Helix 89	AJ8	C	474	480	Right-handed alpha
Helix 90	AJ9	C	492	506	Right-handed alpha
Helix 91	AK1	C	526	533	Right-handed alpha
Helix 92	AK2	C	534	536	Right-handed 310
Helix 93	AK3	C	557	571	Right-handed alpha
Helix 94	AK4	C	582	587	Right-handed alpha
Helix 95	AK5	C	590	598	Right-handed alpha
Helix 96	AK6	C	612	614	Right-handed 310
Helix 97	AK7	C	615	620	Right-handed alpha
Helix 98	AK8	C	636	644	Right-handed alpha
Helix 99	AK9	C	647	657	Right-handed alpha
Helix 100	AL1	D	2	20	Right-handed alpha
Helix 101	AL2	D	24	30	Right-handed alpha
Helix 102	AL3	D	30	41	Right-handed alpha
Helix 103	AL4	D	61	63	Right-handed 310
Helix 104	AL5	D	64	76	Right-handed alpha
Helix 105	AL6	D	80	85	Right-handed alpha
Helix 106	AL7	D	114	135	Right-handed alpha
Helix 107	AL8	D	151	157	Right-handed alpha
Helix 108	AL9	D	157	170	Right-handed alpha
Helix 109	AM1	D	197	205	Right-handed alpha
Helix 110	AM2	D	217	231	Right-handed alpha
Helix 111	AM3	D	254	258	Right-handed 310
Helix 112	AM4	D	263	274	Right-handed alpha
Helix 113	AM5	D	284	292	Right-handed alpha
Helix 114	AM6	D	293	315	Right-handed alpha
Helix 115	AM7	D	315	327	Right-handed alpha
Helix 116	AM8	D	333	348	Right-handed alpha
Helix 117	AM9	D	361	369	Right-handed alpha
Helix 118	AN1	D	407	422	Right-handed alpha
Helix 119	AN2	D	433	437	Right-handed 310
Helix 120	AN3	D	438	449	Right-handed alpha
Helix 121	AN4	D	460	464	Right-handed 310
Helix 122	AN5	D	474	480	Right-handed alpha
Helix 123	AN6	D	492	506	Right-handed alpha
Helix 124	AN7	D	526	533	Right-handed alpha
Helix 125	AN8	D	534	536	Right-handed 310
Helix 126	AN9	D	557	571	Right-handed alpha
Helix 127	AO1	D	582	588	Right-handed alpha
Helix 128	AO2	D	590	598	Right-handed alpha
Helix 129	AO3	D	612	614	Right-handed 310
Helix 130	AO4	D	615	620	Right-handed alpha
Helix 131	AO5	D	636	644	Right-handed alpha
Helix 132	AO6	D	647	658	Right-handed alpha

There are 14 sheets in PDB entry 5VRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	146	150	parallel
Strand 3	A	175	181	parallel
Strand 4	A	236	241	parallel
Strand 5	A	208	214	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	519	520	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	372	376	parallel
Strand 3	A	425	431	parallel
Strand 4	A	453	457	parallel
Strand 5	A	511	514	parallel
Strand 6	A	486	488	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	575	579	anti-parallel
Strand 3	A	549	553	parallel
Strand 4	A	604	607	parallel
Strand 5	A	624	626	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	146	151	parallel
Strand 3	B	175	181	parallel
Strand 4	B	236	241	parallel
Strand 5	B	208	214	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	188	189	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	403	first strand
Strand 2	B	372	376	parallel
Strand 3	B	425	431	parallel
Strand 4	B	453	457	parallel
Strand 5	B	511	514	parallel
Strand 6	B	486	488	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	576	579	anti-parallel
Strand 3	B	550	553	parallel
Strand 4	B	604	607	parallel
Strand 5	B	624	626	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	146	150	parallel
Strand 3	C	175	181	parallel
Strand 4	C	236	241	parallel
Strand 5	C	208	214	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	403	first strand
Strand 2	C	372	376	parallel
Strand 3	C	425	431	parallel
Strand 4	C	453	457	parallel
Strand 5	C	511	514	parallel
Strand 6	C	486	488	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	541	first strand
Strand 2	C	575	579	anti-parallel
Strand 3	C	549	553	parallel
Strand 4	C	604	607	parallel
Strand 5	C	624	626	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	146	150	parallel
Strand 3	D	175	181	parallel
Strand 4	D	236	241	parallel
Strand 5	D	208	214	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	403	first strand
Strand 2	D	372	376	parallel
Strand 3	D	425	431	parallel
Strand 4	D	453	457	parallel
Strand 5	D	511	514	parallel
Strand 6	D	486	488	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	541	first strand
Strand 2	D	575	579	anti-parallel
Strand 3	D	549	553	parallel
Strand 4	D	604	607	parallel
Strand 5	D	624	626	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VRB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRB