Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VRC entry

There are 4 chains in PDB entry 5VRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14LEU 257
B
 ARG 15VAL 258
C
 ARG 15VAL 258
D
 LEU 16VAL 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5VRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 34Right-handed alpha
Helix 2
AA2
A
35 37Right-handed 310
Helix 3
AA3
A
38 46Right-handed alpha
Helix 4
AA4
A
50 77Right-handed alpha
Helix 5
AA5
A
81 97Right-handed alpha
Helix 6
AA6
A
103 115Right-handed alpha
Helix 7
AA7
A
118 125Right-handed alpha
Helix 8
AA8
A
129 146Right-handed alpha
Helix 9
AA9
A
147 154Right-handed alpha
Helix 10
AB1
A
155 161Right-handed 310
Helix 11
AB2
A
169 174Right-handed alpha
Helix 12
AB3
A
180 186Right-handed alpha
Helix 13
AB4
A
200 209Right-handed alpha
Helix 14
AB5
A
211 241Right-handed alpha
Helix 15
AB6
B
18 34Right-handed alpha
Helix 16
AB7
B
35 37Right-handed 310
Helix 17
AB8
B
38 46Right-handed alpha
Helix 18
AB9
B
50 77Right-handed alpha
Helix 19
AC1
B
81 97Right-handed alpha
Helix 20
AC2
B
105 115Right-handed alpha
Helix 21
AC3
B
118 125Right-handed alpha
Helix 22
AC4
B
129 146Right-handed alpha
Helix 23
AC5
B
147 154Right-handed alpha
Helix 24
AC6
B
155 161Right-handed 310
Helix 25
AC7
B
172 176Right-handed 310
Helix 26
AC8
B
180 189Right-handed alpha
Helix 27
AC9
B
199 209Right-handed alpha
Helix 28
AD1
B
211 241Right-handed alpha
Helix 29
AD2
C
18 34Right-handed alpha
Helix 30
AD3
C
35 37Right-handed 310
Helix 31
AD4
C
38 46Right-handed alpha
Helix 32
AD5
C
50 78Right-handed alpha
Helix 33
AD6
C
81 97Right-handed alpha
Helix 34
AD7
C
105 115Right-handed alpha
Helix 35
AD8
C
118 125Right-handed alpha
Helix 36
AD9
C
129 146Right-handed alpha
Helix 37
AE1
C
147 154Right-handed alpha
Helix 38
AE2
C
155 161Right-handed 310
Helix 39
AE3
C
172 176Right-handed 310
Helix 40
AE4
C
180 187Right-handed alpha
Helix 41
AE5
C
200 209Right-handed alpha
Helix 42
AE6
C
211 241Right-handed alpha
Helix 43
AE7
D
18 33Right-handed alpha
Helix 44
AE8
D
34 37Right-handed 310
Helix 45
AE9
D
38 46Right-handed alpha
Helix 46
AF1
D
50 78Right-handed alpha
Helix 47
AF2
D
81 97Right-handed alpha
Helix 48
AF3
D
105 115Right-handed alpha
Helix 49
AF4
D
118 125Right-handed alpha
Helix 50
AF5
D
129 146Right-handed alpha
Helix 51
AF6
D
147 154Right-handed alpha
Helix 52
AF7
D
169 174Right-handed alpha
Helix 53
AF8
D
180 186Right-handed alpha
Helix 54
AF9
D
199 209Right-handed alpha
Helix 55
AG1
D
211 241Right-handed alpha
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There are no sheets in PDB entry 5VRC
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il