Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VRD entry

There are 4 chains in PDB entry 5VRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ARG 15TRP 251
A
 LEU 16TRP 251
B
 LEU 17PRO 248
C
 HIS 19GLY 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5VRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
22 33Right-handed alpha
Helix 2
AA2
D
34 37Right-handed 310
Helix 3
AA3
D
38 46Right-handed alpha
Helix 4
AA4
D
50 67Right-handed alpha
Helix 5
AA5
D
67 78Right-handed alpha
Helix 6
AA6
D
81 97Right-handed alpha
Helix 7
AA7
D
103 115Right-handed alpha
Helix 8
AA8
D
118 125Right-handed alpha
Helix 9
AA9
D
129 146Right-handed alpha
Helix 10
AB1
D
147 154Right-handed alpha
Helix 11
AB2
D
155 161Right-handed 310
Helix 12
AB3
D
199 209Right-handed alpha
Helix 13
AB4
D
211 241Right-handed alpha
Helix 14
AB5
A
18 34Right-handed alpha
Helix 15
AB6
A
35 37Right-handed 310
Helix 16
AB7
A
38 46Right-handed alpha
Helix 17
AB8
A
50 78Right-handed alpha
Helix 18
AB9
A
81 97Right-handed alpha
Helix 19
AC1
A
103 114Right-handed alpha
Helix 20
AC2
A
118 125Right-handed alpha
Helix 21
AC3
A
129 146Right-handed alpha
Helix 22
AC4
A
147 155Right-handed alpha
Helix 23
AC5
A
156 161Right-handed 310
Helix 24
AC6
A
197 209Right-handed alpha
Helix 25
AC7
A
211 241Right-handed alpha
Helix 26
AC8
B
18 31Right-handed alpha
Helix 27
AC9
B
34 37Right-handed 310
Helix 28
AD1
B
38 46Right-handed alpha
Helix 29
AD2
B
50 66Right-handed alpha
Helix 30
AD3
B
67 77Right-handed alpha
Helix 31
AD4
B
81 97Right-handed alpha
Helix 32
AD5
B
104 115Right-handed alpha
Helix 33
AD6
B
118 125Right-handed alpha
Helix 34
AD7
B
129 146Right-handed alpha
Helix 35
AD8
B
147 154Right-handed alpha
Helix 36
AD9
B
155 160Right-handed 310
Helix 37
AE1
B
199 209Right-handed alpha
Helix 38
AE2
B
211 241Right-handed alpha
Helix 39
AE3
C
20 29Right-handed alpha
Helix 40
AE4
C
38 46Right-handed alpha
Helix 41
AE5
C
50 66Right-handed alpha
Helix 42
AE6
C
67 79Right-handed alpha
Helix 43
AE7
C
81 89Right-handed alpha
Helix 44
AE8
C
89 97Right-handed alpha
Helix 45
AE9
C
103 115Right-handed alpha
Helix 46
AF1
C
118 125Right-handed alpha
Helix 47
AF2
C
129 146Right-handed alpha
Helix 48
AF3
C
147 156Right-handed alpha
Helix 49
AF4
C
157 161Right-handed 310
Helix 50
AF5
C
183 187Right-handed 310
Helix 51
AF6
C
199 209Right-handed alpha
Helix 52
AF7
C
211 241Right-handed alpha
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There are no sheets in PDB entry 5VRD
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