Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VRF entry

There are 2 chains in PDB entry 5VRF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 7PRO 288
A
 TYR 7PRO 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5VRF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 37Right-handed alpha
Helix 2
AA2
B
38 66Right-handed alpha
Helix 3
AA3
B
79 109Right-handed alpha
Helix 4
AA4
B
115 142Right-handed alpha
Helix 5
AA5
B
149 174Right-handed alpha
Helix 6
AA6
B
178 208Right-handed alpha
Helix 7
AA7
B
213 226Right-handed alpha
Helix 8
AA8
B
258 277Right-handed alpha
Helix 9
AA9
A
9 37Right-handed alpha
Helix 10
AB1
A
38 66Right-handed alpha
Helix 11
AB2
A
79 109Right-handed alpha
Helix 12
AB3
A
115 142Right-handed alpha
Helix 13
AB4
A
149 174Right-handed alpha
Helix 14
AB5
A
178 208Right-handed alpha
Helix 15
AB6
A
213 226Right-handed alpha
Helix 16
AB7
A
258 277Right-handed alpha
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There are 2 sheets in PDB entry 5VRF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 241first strand
Strand 2
B
244 252anti-parallel
Strand 3
B
280 287parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 241first strand
Strand 2
A
244 252anti-parallel
Strand 3
A
280 287parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il