Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VRG entry

There is 1 chain in PDB entry 5VRG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4LEU 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5VRG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 25Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
34 48Right-handed alpha
Helix 4
AA4
A
52 72Right-handed alpha
Helix 5
AA5
A
74 83Right-handed alpha
Helix 6
AA6
A
87 116Right-handed alpha
Helix 7
AA7
A
120 126Right-handed alpha
Helix 8
AA8
A
126 140Right-handed alpha
Helix 9
AA9
A
141 145Right-handed 310
Helix 10
AB1
A
150 156Right-handed 310
Helix 11
AB2
A
160 162Right-handed 310
Helix 12
AB3
A
163 168Right-handed alpha
Helix 13
AB4
A
168 189Right-handed alpha
Helix 14
AB5
A
191 204Right-handed alpha
Helix 15
AB6
A
205 211Right-handed 310
Helix 16
AB7
A
218 221Right-handed 310
Helix 17
AB8
A
232 237Right-handed alpha
Helix 18
AB9
A
241 254Right-handed alpha
Helix 19
AC1
A
255 257Right-handed 310
Helix 20
AC2
A
277 291Right-handed alpha
Helix 21
AC3
A
388 391Right-handed 310
Helix 22
AC4
A
392 400Right-handed alpha
Helix 23
AC5
A
412 417Right-handed 310
Helix 24
AC6
A
420 437Right-handed alpha
Helix 25
AC7
A
481 487Right-handed alpha
Helix 26
AC8
A
488 506Right-handed alpha
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There are 3 sheets in PDB entry 5VRG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
477 478anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
310 320anti-parallel
Strand 3
A
294 304anti-parallel
Strand 4
A
262 273parallel
Strand 5
A
222 228parallel
Strand 6
A
468 474anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
380 386anti-parallel
Strand 3
A
406 411parallel
Strand 4
A
440 444parallel
Strand 5
A
450 452anti-parallel
Strand 6
A
458 461anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il