Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VRK entry

There are 4 chains in PDB entry 5VRK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 136
A
 ILE 138SER 314
B
 MET 1VAL 136
B
 ILE 138SER 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5VRK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
29 36Right-handed alpha
Helix 3
AA3
A
37 40Right-handed 310
Helix 4
AA4
A
41 59Right-handed alpha
Helix 5
AA5
A
75 87Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
110 124Right-handed alpha
Helix 8
AA8
A
146 164Right-handed alpha
Helix 9
AA9
A
176 188Right-handed alpha
Helix 10
AB1
A
191 193Right-handed 310
Helix 11
AB2
A
199 203Right-handed 310
Helix 12
AB3
A
205 215Right-handed alpha
Helix 13
AB4
A
231 245Right-handed alpha
Helix 14
AB5
A
247 249Right-handed 310
Helix 15
AB6
A
281 286Right-handed alpha
Helix 16
AB7
A
286 294Right-handed alpha
Helix 17
AB8
A
297 306Right-handed alpha
Helix 18
AB9
A
306 313Right-handed alpha
Helix 19
AC1
B
12 16Right-handed 310
Helix 20
AC2
B
29 36Right-handed alpha
Helix 21
AC3
B
37 40Right-handed 310
Helix 22
AC4
B
41 59Right-handed alpha
Helix 23
AC5
B
75 87Right-handed alpha
Helix 24
AC6
B
103 107Right-handed 310
Helix 25
AC7
B
110 124Right-handed alpha
Helix 26
AC8
B
146 164Right-handed alpha
Helix 27
AC9
B
176 188Right-handed alpha
Helix 28
AD1
B
191 193Right-handed 310
Helix 29
AD2
B
199 203Right-handed 310
Helix 30
AD3
B
205 215Right-handed alpha
Helix 31
AD4
B
231 245Right-handed alpha
Helix 32
AD5
B
247 249Right-handed 310
Helix 33
AD6
B
281 286Right-handed alpha
Helix 34
AD7
B
286 294Right-handed alpha
Helix 35
AD8
B
297 306Right-handed alpha
Helix 36
AD9
B
306 313Right-handed alpha
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There are 6 sheets in PDB entry 5VRK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 11anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
63 66parallel
Strand 3
A
89 92parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
136 139parallel
Strand 3
A
167 170parallel
Strand 4
A
195 197parallel
Strand 5
A
218 221parallel
Strand 6
A
251 253parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
8 11anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
63 66parallel
Strand 3
B
89 92parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
136 139parallel
Strand 3
B
167 170parallel
Strand 4
B
195 197parallel
Strand 5
B
218 221parallel
Strand 6
B
251 253parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il