Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VRP entry

There are 2 chains in PDB entry 5VRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 70	ARG 406
B	GLY 70	ARG 406

There are 20 helices in PDB entry 5VRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	122	127	Right-handed alpha
Helix 2	AA2	A	131	135	Right-handed 310
Helix 3	AA3	A	181	186	Right-handed alpha
Helix 4	AA4	A	198	206	Right-handed 310
Helix 5	AA5	A	208	217	Right-handed alpha
Helix 6	AA6	A	248	250	Right-handed 310
Helix 7	AA7	A	301	313	Right-handed alpha
Helix 8	AA8	A	327	331	Right-handed 310
Helix 9	AA9	A	346	351	Right-handed alpha
Helix 10	AB1	A	382	388	Right-handed alpha
Helix 11	AB2	B	122	127	Right-handed alpha
Helix 12	AB3	B	131	135	Right-handed 310
Helix 13	AB4	B	181	186	Right-handed alpha
Helix 14	AB5	B	198	206	Right-handed 310
Helix 15	AB6	B	208	216	Right-handed alpha
Helix 16	AB7	B	248	250	Right-handed 310
Helix 17	AB8	B	301	313	Right-handed alpha
Helix 18	AB9	B	327	331	Right-handed 310
Helix 19	AC1	B	346	351	Right-handed alpha
Helix 20	AC2	B	382	388	Right-handed alpha

There are 12 sheets in PDB entry 5VRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	148	first strand
Strand 2	A	153	165	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	74	81	anti-parallel
Strand 5	A	240	244	anti-parallel
Strand 6	A	223	228	anti-parallel
Strand 7	A	389	394	anti-parallel
Strand 8	A	399	405	anti-parallel
Strand 9	A	252	260	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	148	first strand
Strand 2	A	153	165	anti-parallel
Strand 3	A	168	179	anti-parallel
Strand 4	A	111	113	parallel
Strand 5	A	192	195	anti-parallel
Strand 6	A	97	104	parallel
Strand 7	A	85	92	anti-parallel
Strand 8	A	74	81	anti-parallel
Strand 9	A	240	244	anti-parallel
Strand 10	A	223	228	anti-parallel
Strand 11	A	389	394	anti-parallel
Strand 12	A	399	405	anti-parallel
Strand 13	A	252	260	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	334	338	anti-parallel
Strand 4	A	341	345	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	287	291	anti-parallel
Strand 4	A	379	381	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	366	368	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	316	first strand
Strand 2	A	321	324	anti-parallel
Strand 3	A	361	363	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	148	first strand
Strand 2	B	153	165	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	74	81	anti-parallel
Strand 5	B	240	244	anti-parallel
Strand 6	B	223	228	anti-parallel
Strand 7	B	389	394	anti-parallel
Strand 8	B	399	405	anti-parallel
Strand 9	B	252	260	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	148	first strand
Strand 2	B	153	165	anti-parallel
Strand 3	B	168	179	anti-parallel
Strand 4	B	111	113	parallel
Strand 5	B	192	195	anti-parallel
Strand 6	B	97	104	parallel
Strand 7	B	85	92	anti-parallel
Strand 8	B	74	81	anti-parallel
Strand 9	B	240	244	anti-parallel
Strand 10	B	223	228	anti-parallel
Strand 11	B	389	394	anti-parallel
Strand 12	B	399	405	anti-parallel
Strand 13	B	252	260	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	334	338	anti-parallel
Strand 4	B	341	345	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	287	291	anti-parallel
Strand 4	B	379	381	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	366	368	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	316	first strand
Strand 2	B	321	324	anti-parallel
Strand 3	B	361	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRP