Analysis of interatomic Contacts of Structural Units in PDB entry:
5VRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VRQ entry

There is 1 chain in PDB entry 5VRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3LEU 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5VRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 11Right-handed alpha
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
46 54Right-handed alpha
Helix 4
AA4
A
69 79Right-handed alpha
Helix 5
AA5
A
87 95Right-handed alpha
Helix 6
AA6
A
97 105Right-handed alpha
Helix 7
AA7
A
121 132Right-handed alpha
Helix 8
AA8
A
156 165Right-handed alpha
Helix 9
AA9
A
166 175Right-handed alpha
Helix 10
AB1
A
194 202Right-handed alpha
Helix 11
AB2
A
204 214Right-handed alpha
Helix 12
AB3
A
228 236Right-handed alpha
Helix 13
AB4
A
238 247Right-handed alpha
Helix 14
AB5
A
249 253Right-handed 310
Helix 15
AB6
A
271 279Right-handed alpha
Helix 16
AB7
A
282 284Right-handed 310
Helix 17
AB8
A
285 299Right-handed alpha
Helix 18
AB9
A
306 315Right-handed alpha
Helix 19
AC1
A
318 328Right-handed alpha
Helix 20
AC2
A
331 333Right-handed 310
Helix 21
AC3
A
334 342Right-handed alpha
Helix 22
AC4
A
348 354Right-handed alpha
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There are 2 sheets in PDB entry 5VRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
44 45anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
192 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il