Analysis of interatomic Contacts of Structural Units in PDB entry:
5VS6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VS6 entry

There are 2 chains in PDB entry 5VS6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 208	LYS 554
B	LYS 209	LYS 554

There are 32 helices in PDB entry 5VS6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	224	234	Right-handed alpha
Helix 2	AA2	A	235	245	Right-handed alpha
Helix 3	AA3	A	255	270	Right-handed alpha
Helix 4	AA4	A	276	284	Right-handed alpha
Helix 5	AA5	A	287	293	Right-handed alpha
Helix 6	AA6	A	295	312	Right-handed alpha
Helix 7	AA7	A	318	325	Right-handed alpha
Helix 8	AA8	A	359	368	Right-handed alpha
Helix 9	AA9	A	374	378	Right-handed 310
Helix 10	AB1	A	382	384	Right-handed 310
Helix 11	AB2	A	434	437	Right-handed 310
Helix 12	AB3	A	489	494	Right-handed alpha
Helix 13	AB4	A	495	498	Right-handed 310
Helix 14	AB5	A	523	528	Right-handed alpha
Helix 15	AB6	A	532	536	Right-handed 310
Helix 16	AB7	A	537	553	Right-handed alpha
Helix 17	AB8	B	224	234	Right-handed alpha
Helix 18	AB9	B	235	244	Right-handed alpha
Helix 19	AC1	B	255	270	Right-handed alpha
Helix 20	AC2	B	276	284	Right-handed alpha
Helix 21	AC3	B	287	293	Right-handed alpha
Helix 22	AC4	B	295	312	Right-handed alpha
Helix 23	AC5	B	318	325	Right-handed alpha
Helix 24	AC6	B	359	368	Right-handed alpha
Helix 25	AC7	B	374	378	Right-handed 310
Helix 26	AC8	B	382	384	Right-handed 310
Helix 27	AC9	B	434	437	Right-handed 310
Helix 28	AD1	B	489	494	Right-handed alpha
Helix 29	AD2	B	495	498	Right-handed 310
Helix 30	AD3	B	523	528	Right-handed alpha
Helix 31	AD4	B	532	536	Right-handed 310
Helix 32	AD5	B	537	554	Right-handed alpha

There are 10 sheets in PDB entry 5VS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	347	first strand
Strand 2	A	326	334	anti-parallel
Strand 3	A	389	397	anti-parallel
Strand 4	A	371	373	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	401	406	parallel
Strand 3	A	512	520	anti-parallel
Strand 4	A	447	457	anti-parallel
Strand 5	A	430	432	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	401	406	parallel
Strand 3	A	512	520	anti-parallel
Strand 4	A	447	457	anti-parallel
Strand 5	A	464	469	anti-parallel
Strand 6	A	478	481	anti-parallel
Strand 7	A	484	487	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	386	387	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	417	420	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	347	first strand
Strand 2	B	326	334	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	371	373	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	401	406	parallel
Strand 3	B	511	520	anti-parallel
Strand 4	B	447	457	anti-parallel
Strand 5	B	430	432	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	401	406	parallel
Strand 3	B	511	520	anti-parallel
Strand 4	B	447	457	anti-parallel
Strand 5	B	464	469	anti-parallel
Strand 6	B	478	481	anti-parallel
Strand 7	B	484	487	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	386	387	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	412	first strand
Strand 2	B	417	420	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VS6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VS6