Analysis of interatomic Contacts of Structural Units in PDB entry:
5VSA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VSA entry

There are 8 chains in PDB entry 5VSA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 136
A
 ILE 138SER 314
B
 MET 1VAL 136
B
 ILE 138SER 314
C
 MET 1VAL 136
C
 ILE 138SER 314
D
 MET 1VAL 136
D
 ILE 138SER 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 5VSA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
29 36Right-handed alpha
Helix 3
AA3
A
37 40Right-handed 310
Helix 4
AA4
A
41 59Right-handed alpha
Helix 5
AA5
A
75 87Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
110 124Right-handed alpha
Helix 8
AA8
A
146 164Right-handed alpha
Helix 9
AA9
A
176 188Right-handed alpha
Helix 10
AB1
A
191 193Right-handed 310
Helix 11
AB2
A
199 203Right-handed 310
Helix 12
AB3
A
205 215Right-handed alpha
Helix 13
AB4
A
231 245Right-handed alpha
Helix 14
AB5
A
281 286Right-handed alpha
Helix 15
AB6
A
286 294Right-handed alpha
Helix 16
AB7
A
297 306Right-handed alpha
Helix 17
AB8
A
306 313Right-handed alpha
Helix 18
AB9
B
12 16Right-handed 310
Helix 19
AC1
B
29 36Right-handed alpha
Helix 20
AC2
B
37 40Right-handed 310
Helix 21
AC3
B
41 59Right-handed alpha
Helix 22
AC4
B
75 87Right-handed alpha
Helix 23
AC5
B
103 107Right-handed 310
Helix 24
AC6
B
110 124Right-handed alpha
Helix 25
AC7
B
146 164Right-handed alpha
Helix 26
AC8
B
176 188Right-handed alpha
Helix 27
AC9
B
191 193Right-handed 310
Helix 28
AD1
B
199 203Right-handed 310
Helix 29
AD2
B
205 215Right-handed alpha
Helix 30
AD3
B
231 245Right-handed alpha
Helix 31
AD4
B
246 249Right-handed 310
Helix 32
AD5
B
263 269Right-handed 310
Helix 33
AD6
B
270 275Right-handed alpha
Helix 34
AD7
B
281 286Right-handed alpha
Helix 35
AD8
B
286 294Right-handed alpha
Helix 36
AD9
B
297 306Right-handed alpha
Helix 37
AE1
B
306 313Right-handed alpha
Helix 38
AE2
C
12 16Right-handed 310
Helix 39
AE3
C
29 36Right-handed alpha
Helix 40
AE4
C
37 40Right-handed 310
Helix 41
AE5
C
41 59Right-handed alpha
Helix 42
AE6
C
75 87Right-handed alpha
Helix 43
AE7
C
103 107Right-handed 310
Helix 44
AE8
C
110 124Right-handed alpha
Helix 45
AE9
C
146 164Right-handed alpha
Helix 46
AF1
C
176 188Right-handed alpha
Helix 47
AF2
C
191 193Right-handed 310
Helix 48
AF3
C
199 203Right-handed 310
Helix 49
AF4
C
205 215Right-handed alpha
Helix 50
AF5
C
231 245Right-handed alpha
Helix 51
AF6
C
247 249Right-handed 310
Helix 52
AF7
C
281 286Right-handed alpha
Helix 53
AF8
C
286 293Right-handed alpha
Helix 54
AF9
C
297 306Right-handed alpha
Helix 55
AG1
C
306 313Right-handed alpha
Helix 56
AG2
D
12 16Right-handed 310
Helix 57
AG3
D
29 36Right-handed alpha
Helix 58
AG4
D
37 40Right-handed 310
Helix 59
AG5
D
41 59Right-handed alpha
Helix 60
AG6
D
75 87Right-handed alpha
Helix 61
AG7
D
103 107Right-handed 310
Helix 62
AG8
D
110 124Right-handed alpha
Helix 63
AG9
D
146 164Right-handed alpha
Helix 64
AH1
D
176 188Right-handed alpha
Helix 65
AH2
D
191 193Right-handed 310
Helix 66
AH3
D
199 203Right-handed 310
Helix 67
AH4
D
205 215Right-handed alpha
Helix 68
AH5
D
231 245Right-handed alpha
Helix 69
AH6
D
247 249Right-handed 310
Helix 70
AH7
D
281 286Right-handed alpha
Helix 71
AH8
D
286 293Right-handed alpha
Helix 72
AH9
D
297 306Right-handed alpha
Helix 73
AI1
D
306 313Right-handed alpha
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There are 12 sheets in PDB entry 5VSA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 11anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
63 66parallel
Strand 3
A
89 92parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
136 139parallel
Strand 3
A
167 170parallel
Strand 4
A
195 197parallel
Strand 5
A
218 221parallel
Strand 6
A
251 253parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
8 11anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
63 66parallel
Strand 3
B
89 92parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
136 139parallel
Strand 3
B
167 170parallel
Strand 4
B
195 197parallel
Strand 5
B
218 221parallel
Strand 6
B
251 253parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
8 11anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 20first strand
Strand 2
C
63 66parallel
Strand 3
C
89 92parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 96first strand
Strand 2
C
136 139parallel
Strand 3
C
167 170parallel
Strand 4
C
195 197parallel
Strand 5
C
218 221parallel
Strand 6
C
251 253parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
8 11anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 20first strand
Strand 2
D
63 66parallel
Strand 3
D
89 92parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 96first strand
Strand 2
D
136 139parallel
Strand 3
D
167 170parallel
Strand 4
D
195 197parallel
Strand 5
D
218 221parallel
Strand 6
D
251 253parallel
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