Analysis of interatomic Contacts of Structural Units in PDB entry:
5VSJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VSJ entry

There are 2 chains in PDB entry 5VSJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	ARG 663
B	PRO 15	ARG 663

There are 55 helices in PDB entry 5VSJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	109	122	Right-handed alpha
Helix 3	AA3	A	127	146	Right-handed alpha
Helix 4	AA4	A	148	163	Right-handed alpha
Helix 5	AA5	A	168	175	Right-handed alpha
Helix 6	AA6	A	178	188	Right-handed alpha
Helix 7	AA7	A	206	210	Right-handed 310
Helix 8	AA8	A	218	222	Right-handed 310
Helix 9	AA9	A	231	237	Right-handed alpha
Helix 10	AB1	A	238	245	Right-handed alpha
Helix 11	AB2	A	265	269	Right-handed 310
Helix 12	AB3	A	299	313	Right-handed alpha
Helix 13	AB4	A	330	335	Right-handed alpha
Helix 14	AB5	A	336	339	Right-handed 310
Helix 15	AB6	A	368	386	Right-handed alpha
Helix 16	AB7	A	396	399	Right-handed 310
Helix 17	AB8	A	400	415	Right-handed alpha
Helix 18	AB9	A	427	437	Right-handed alpha
Helix 19	AC1	A	445	449	Right-handed 310
Helix 20	AC2	A	451	464	Right-handed alpha
Helix 21	AC3	A	465	469	Right-handed 310
Helix 22	AC4	A	483	505	Right-handed alpha
Helix 23	AC5	A	513	517	Right-handed 310
Helix 24	AC6	A	541	548	Right-handed alpha
Helix 25	AC7	A	552	565	Right-handed alpha
Helix 26	AC8	A	566	571	Right-handed 310
Helix 27	AC9	A	616	621	Right-handed 310
Helix 28	AD1	B	30	34	Right-handed 310
Helix 29	AD2	B	109	122	Right-handed alpha
Helix 30	AD3	B	127	145	Right-handed alpha
Helix 31	AD4	B	148	163	Right-handed alpha
Helix 32	AD5	B	168	175	Right-handed alpha
Helix 33	AD6	B	178	186	Right-handed alpha
Helix 34	AD7	B	206	211	Right-handed alpha
Helix 35	AD8	B	218	222	Right-handed 310
Helix 36	AD9	B	231	236	Right-handed alpha
Helix 37	AE1	B	238	245	Right-handed alpha
Helix 38	AE2	B	265	269	Right-handed 310
Helix 39	AE3	B	294	298	Right-handed 310
Helix 40	AE4	B	299	313	Right-handed alpha
Helix 41	AE5	B	330	335	Right-handed alpha
Helix 42	AE6	B	336	339	Right-handed 310
Helix 43	AE7	B	368	386	Right-handed alpha
Helix 44	AE8	B	395	399	Right-handed 310
Helix 45	AE9	B	400	415	Right-handed alpha
Helix 46	AF1	B	427	437	Right-handed alpha
Helix 47	AF2	B	445	449	Right-handed 310
Helix 48	AF3	B	451	464	Right-handed alpha
Helix 49	AF4	B	465	469	Right-handed 310
Helix 50	AF5	B	483	505	Right-handed alpha
Helix 51	AF6	B	532	536	Right-handed 310
Helix 52	AF7	B	541	548	Right-handed alpha
Helix 53	AF8	B	552	566	Right-handed alpha
Helix 54	AF9	B	567	571	Right-handed 310
Helix 55	AG1	B	616	621	Right-handed 310

There are 15 sheets in PDB entry 5VSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	44	51	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	79	80	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	200	205	parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	59	66	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	200	205	parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	192	196	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	249	252	parallel
Strand 3	A	316	321	parallel
Strand 4	A	388	394	parallel
Strand 5	A	419	423	parallel
Strand 6	A	441	443	parallel
Strand 7	A	472	475	parallel
Strand 8	A	507	511	parallel
Strand 9	A	212	216	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	361	362	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	355	357	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	578	first strand
Strand 2	A	585	592	anti-parallel
Strand 3	A	595	602	anti-parallel
Strand 4	A	656	661	anti-parallel
Strand 5	A	628	632	anti-parallel
Strand 6	A	638	641	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	612	first strand
Strand 2	A	646	649	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	44	51	anti-parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	79	80	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	200	205	parallel
Strand 3	B	98	108	anti-parallel
Strand 4	B	59	66	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	200	205	parallel
Strand 3	B	98	108	anti-parallel
Strand 4	B	192	196	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	419	422	parallel
Strand 3	B	390	393	parallel
Strand 4	B	316	321	parallel
Strand 5	B	249	252	parallel
Strand 6	B	212	216	parallel
Strand 7	B	507	511	parallel
Strand 8	B	474	475	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	355	357	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	577	first strand
Strand 2	B	585	592	anti-parallel
Strand 3	B	595	602	anti-parallel
Strand 4	B	656	661	anti-parallel
Strand 5	B	628	632	anti-parallel
Strand 6	B	638	641	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	613	first strand
Strand 2	B	645	649	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VSJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VSJ