Analysis of interatomic Contacts of Structural Units in PDB entry:
5VSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VSM entry

There are 2 chains in PDB entry 5VSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 74LYS 335
B
 VAL 76ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5VSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 117Right-handed alpha
Helix 2
AA2
A
130 133Right-handed 310
Helix 3
AA3
A
134 147Right-handed alpha
Helix 4
AA4
A
163 171Right-handed alpha
Helix 5
AA5
A
172 174Right-handed 310
Helix 6
AA6
A
185 193Right-handed alpha
Helix 7
AA7
A
200 216Right-handed alpha
Helix 8
AA8
A
234 242Right-handed alpha
Helix 9
AA9
A
267 271Right-handed 310
Helix 10
AB1
A
273 284Right-handed alpha
Helix 11
AB2
A
294 302Right-handed alpha
Helix 12
AB3
A
324 335Right-handed alpha
Helix 13
AB4
B
102 116Right-handed alpha
Helix 14
AB5
B
127 133Right-handed 310
Helix 15
AB6
B
134 147Right-handed alpha
Helix 16
AB7
B
163 171Right-handed alpha
Helix 17
AB8
B
172 174Right-handed 310
Helix 18
AB9
B
185 193Right-handed alpha
Helix 19
AC1
B
200 216Right-handed alpha
Helix 20
AC2
B
234 242Right-handed alpha
Helix 21
AC3
B
267 271Right-handed 310
Helix 22
AC4
B
273 284Right-handed alpha
Helix 23
AC5
B
294 302Right-handed alpha
Helix 24
AC6
B
324 333Right-handed alpha
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There are 2 sheets in PDB entry 5VSM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
245 250parallel
Strand 3
A
218 225parallel
Strand 4
A
176 180parallel
Strand 5
A
152 157parallel
Strand 6
A
120 124parallel
Strand 7
A
75 79parallel
Strand 8
A
304 305parallel
Strand 9
A
311 312anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
245 250parallel
Strand 3
B
218 225parallel
Strand 4
B
176 180parallel
Strand 5
B
152 157parallel
Strand 6
B
120 124parallel
Strand 7
B
77 79parallel
Strand 8
B
304 305parallel
Strand 9
B
311 312anti-parallel
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