Analysis of interatomic Contacts of Structural Units in PDB entry:
5VT0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VT0 entry

There are 7 chains in PDB entry 5VT0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	PHE 8	GLU 235
H	THR 6	LEU 234
I	TYR 3	GLU 1342
J	GLU 16	ALA 1375
K	ALA 2	LEU 80
L	THR 94	ASP 613
R	C 32	G 153

There are127 helices in PDB entry 5VT0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	34	50	Right-handed alpha
Helix 2	AA2	G	77	87	Right-handed alpha
Helix 3	AA3	G	113	115	Right-handed 310
Helix 4	AA4	G	154	159	Right-handed alpha
Helix 5	AA5	G	212	229	Right-handed alpha
Helix 6	AA6	H	34	50	Right-handed alpha
Helix 7	AA7	H	77	86	Right-handed alpha
Helix 8	AA8	H	212	228	Right-handed alpha
Helix 9	AA9	I	28	39	Right-handed alpha
Helix 10	AB1	I	48	57	Right-handed alpha
Helix 11	AB2	I	81	89	Right-handed alpha
Helix 12	AB3	I	206	212	Right-handed alpha
Helix 13	AB4	I	216	225	Right-handed alpha
Helix 14	AB5	I	242	247	Right-handed 310
Helix 15	AB6	I	270	280	Right-handed alpha
Helix 16	AB7	I	290	294	Right-handed 310
Helix 17	AB8	I	318	329	Right-handed alpha
Helix 18	AB9	I	345	354	Right-handed alpha
Helix 19	AC1	I	358	369	Right-handed alpha
Helix 20	AC2	I	377	390	Right-handed alpha
Helix 21	AC3	I	398	408	Right-handed alpha
Helix 22	AC4	I	421	437	Right-handed alpha
Helix 23	AC5	I	455	481	Right-handed alpha
Helix 24	AC6	I	495	508	Right-handed alpha
Helix 25	AC7	I	519	527	Right-handed alpha
Helix 26	AC8	I	551	555	Right-handed 310
Helix 27	AC9	I	662	667	Right-handed alpha
Helix 28	AD1	I	670	674	Right-handed 310
Helix 29	AD2	I	675	686	Right-handed alpha
Helix 30	AD3	I	704	711	Right-handed alpha
Helix 31	AD4	I	820	826	Right-handed alpha
Helix 32	AD5	I	858	863	Right-handed alpha
Helix 33	AD6	I	897	907	Right-handed alpha
Helix 34	AD7	I	942	981	Right-handed alpha
Helix 35	AD8	I	994	998	Right-handed 310
Helix 36	AD9	I	1005	1038	Right-handed alpha
Helix 37	AE1	I	1081	1085	Right-handed 310
Helix 38	AE2	I	1101	1106	Right-handed alpha
Helix 39	AE3	I	1109	1134	Right-handed alpha
Helix 40	AE4	I	1137	1151	Right-handed alpha
Helix 41	AE5	I	1168	1177	Right-handed alpha
Helix 42	AE6	I	1191	1202	Right-handed alpha
Helix 43	AE7	I	1238	1243	Right-handed alpha
Helix 44	AE8	I	1271	1281	Right-handed alpha
Helix 45	AE9	I	1284	1292	Right-handed alpha
Helix 46	AF1	I	1299	1310	Right-handed alpha
Helix 47	AF2	I	1320	1332	Right-handed alpha
Helix 48	AF3	J	26	34	Right-handed alpha
Helix 49	AF4	J	94	100	Right-handed 310
Helix 50	AF5	J	114	119	Right-handed alpha
Helix 51	AF6	J	122	128	Right-handed alpha
Helix 52	AF7	J	131	140	Right-handed alpha
Helix 53	AF8	J	161	172	Right-handed alpha
Helix 54	AF9	J	181	192	Right-handed alpha
Helix 55	AG1	J	193	207	Right-handed alpha
Helix 56	AG2	J	210	228	Right-handed alpha
Helix 57	AG3	J	233	236	Right-handed 310
Helix 58	AG4	J	246	250	Right-handed 310
Helix 59	AG5	J	263	285	Right-handed alpha
Helix 60	AG6	J	288	308	Right-handed alpha
Helix 61	AG7	J	326	332	Right-handed alpha
Helix 62	AG8	J	336	341	Right-handed alpha
Helix 63	AG9	J	370	377	Right-handed alpha
Helix 64	AH1	J	377	388	Right-handed alpha
Helix 65	AH2	J	393	404	Right-handed alpha
Helix 66	AH3	J	407	417	Right-handed alpha
Helix 67	AH4	J	430	432	Right-handed 310
Helix 68	AH5	J	450	452	Right-handed 310
Helix 69	AH6	J	453	458	Right-handed alpha
Helix 70	AH7	J	473	483	Right-handed alpha
Helix 71	AH8	J	504	514	Right-handed alpha
Helix 72	AH9	J	529	539	Right-handed alpha
Helix 73	AI1	J	574	581	Right-handed alpha
Helix 74	AI2	J	588	592	Right-handed 310
Helix 75	AI3	J	597	613	Right-handed alpha
Helix 76	AI4	J	614	636	Right-handed alpha
Helix 77	AI5	J	640	644	Right-handed 310
Helix 78	AI6	J	649	670	Right-handed alpha
Helix 79	AI7	J	674	702	Right-handed alpha
Helix 80	AI8	J	720	728	Right-handed alpha
Helix 81	AI9	J	733	742	Right-handed alpha
Helix 82	AJ1	J	768	804	Right-handed alpha
Helix 83	AJ2	J	835	840	Right-handed alpha
Helix 84	AJ3	J	865	875	Right-handed alpha
Helix 85	AJ4	J	884	888	Right-handed 310
Helix 86	AJ5	J	895	900	Right-handed alpha
Helix 87	AJ6	J	915	925	Right-handed alpha
Helix 88	AJ7	J	926	928	Right-handed 310
Helix 89	AJ8	J	1138	1145	Right-handed alpha
Helix 90	AJ9	J	1216	1224	Right-handed alpha
Helix 91	AK1	J	1225	1245	Right-handed alpha
Helix 92	AK2	J	1249	1261	Right-handed alpha
Helix 93	AK3	J	1282	1293	Right-handed alpha
Helix 94	AK4	J	1327	1338	Right-handed alpha
Helix 95	AK5	J	1347	1354	Right-handed alpha
Helix 96	AK6	J	1361	1373	Right-handed alpha
Helix 97	AK7	K	6	13	Right-handed alpha
Helix 98	AK8	K	17	32	Right-handed alpha
Helix 99	AK9	K	45	56	Right-handed alpha
Helix 100	AL1	K	60	78	Right-handed alpha
Helix 101	AL2	L	96	106	Right-handed alpha
Helix 102	AL3	L	114	135	Right-handed alpha
Helix 103	AL4	L	137	153	Right-handed alpha
Helix 104	AL5	L	213	232	Right-handed alpha
Helix 105	AL6	L	233	235	Right-handed 310
Helix 106	AL7	L	243	258	Right-handed alpha
Helix 107	AL8	L	262	292	Right-handed alpha
Helix 108	AL9	L	298	307	Right-handed alpha
Helix 109	AM1	L	315	322	Right-handed alpha
Helix 110	AM2	L	327	332	Right-handed 310
Helix 111	AM3	L	333	352	Right-handed alpha
Helix 112	AM4	L	354	383	Right-handed alpha
Helix 113	AM5	L	383	392	Right-handed alpha
Helix 114	AM6	L	394	398	Right-handed 310
Helix 115	AM7	L	400	418	Right-handed alpha
Helix 116	AM8	L	420	424	Right-handed 310
Helix 117	AM9	L	426	447	Right-handed alpha
Helix 118	AN1	L	453	472	Right-handed alpha
Helix 119	AN2	L	479	487	Right-handed alpha
Helix 120	AN3	L	491	501	Right-handed alpha
Helix 121	AN4	L	511	515	Right-handed 310
Helix 122	AN5	L	518	522	Right-handed 310
Helix 123	AN6	L	530	550	Right-handed alpha
Helix 124	AN7	L	552	563	Right-handed alpha
Helix 125	AN8	L	572	581	Right-handed alpha
Helix 126	AN9	L	583	600	Right-handed alpha
Helix 127	AO1	L	603	609	Right-handed alpha

There are 48 sheets in PDB entry 5VT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	18	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	198	207	anti-parallel
Strand 4	G	180	190	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	104	first strand
Strand 2	G	140	150	anti-parallel
Strand 3	G	52	61	anti-parallel
Strand 4	G	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	92	first strand
Strand 2	G	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	175	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	18	first strand
Strand 2	H	23	31	anti-parallel
Strand 3	H	198	207	anti-parallel
Strand 4	H	180	190	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	61	first strand
Strand 2	H	142	149	anti-parallel
Strand 3	H	98	101	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	91	first strand
Strand 2	H	122	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	110	first strand
Strand 2	H	131	132	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	66	75	anti-parallel
Strand 3	I	93	104	anti-parallel
Strand 4	I	117	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	453	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	529	531	parallel
Strand 4	I	572	575	anti-parallel
Strand 5	I	558	559	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	173	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	197	anti-parallel
Strand 5	I	204	205	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	227	231	first strand
Strand 2	I	332	336	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	239	240	first strand
Strand 2	I	284	285	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	255	257	first strand
Strand 2	I	260	263	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	302	first strand
Strand 2	I	309	311	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	599	607	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	652	654	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	633	637	first strand
Strand 2	I	642	646	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	716	717	first strand
Strand 2	I	782	785	anti-parallel
Strand 3	I	768	769	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	749	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	727	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1209	1210	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	1065	1068	anti-parallel
Strand 4	I	1073	1080	anti-parallel
Strand 5	I	816	819	parallel
Strand 6	I	1096	1098	anti-parallel
Strand 7	I	798	804	parallel
Strand 8	I	1225	1234	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	846	847	first strand
Strand 2	I	830	843	anti-parallel
Strand 3	I	1046	1058	anti-parallel
Strand 4	I	927	935	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	887	889	first strand
Strand 2	I	913	915	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1087	1088	first strand
Strand 2	I	1212	1213	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	447	448	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1269	1270	first strand
Strand 2	J	345	346	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1338	first strand
Strand 2	J	20	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	112	first strand
Strand 2	J	238	244	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	160	first strand
Strand 2	J	144	146	anti-parallel
Strand 3	J	178	179	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	252	254	first strand
Strand 2	J	260	262	anti-parallel
Strand 3	L	505	506	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	556	parallel
Strand 3	J	564	573	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	706	707	first strand
Strand 2	J	714	715	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	991	996	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	956	961	anti-parallel
Strand 4	J	1010	1011	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	965	967	first strand
Strand 2	J	973	975	anti-parallel
Strand 3	J	1002	1003	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1025	1026	first strand
Strand 2	J	1123	1124	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1080	1081	first strand
Strand 2	J	1034	1035	anti-parallel
Strand 3	J	1113	1114	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1046	1049	first strand
Strand 2	J	1058	1061	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1077	1078	first strand
Strand 2	J	1099	1100	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1186	1191	first strand
Strand 2	J	1172	1178	anti-parallel
Strand 3	J	1161	1165	anti-parallel
Strand 4	J	1203	1204	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1266	anti-parallel
Strand 3	J	1302	1304	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	162	165	first strand
Strand 2	L	259	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VT0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VT0