Analysis of interatomic Contacts of Structural Units in PDB entry:
5VT4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VT4 entry

There are 4 chains in PDB entry 5VT4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	LEU 662
B	PRO 15	LEU 662
C	PRO 15	ARG 663
D	PRO 15	ARG 663

There are111 helices in PDB entry 5VT4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	109	125	Right-handed alpha
Helix 3	AA3	A	127	146	Right-handed alpha
Helix 4	AA4	A	148	163	Right-handed alpha
Helix 5	AA5	A	168	175	Right-handed alpha
Helix 6	AA6	A	178	188	Right-handed alpha
Helix 7	AA7	A	206	210	Right-handed 310
Helix 8	AA8	A	218	222	Right-handed 310
Helix 9	AA9	A	231	236	Right-handed alpha
Helix 10	AB1	A	238	245	Right-handed alpha
Helix 11	AB2	A	265	269	Right-handed 310
Helix 12	AB3	A	299	313	Right-handed alpha
Helix 13	AB4	A	330	335	Right-handed alpha
Helix 14	AB5	A	336	339	Right-handed 310
Helix 15	AB6	A	368	386	Right-handed alpha
Helix 16	AB7	A	396	399	Right-handed 310
Helix 17	AB8	A	400	415	Right-handed alpha
Helix 18	AB9	A	427	437	Right-handed alpha
Helix 19	AC1	A	445	449	Right-handed 310
Helix 20	AC2	A	451	464	Right-handed alpha
Helix 21	AC3	A	465	469	Right-handed 310
Helix 22	AC4	A	483	505	Right-handed alpha
Helix 23	AC5	A	513	517	Right-handed 310
Helix 24	AC6	A	541	549	Right-handed alpha
Helix 25	AC7	A	552	566	Right-handed alpha
Helix 26	AC8	A	567	571	Right-handed 310
Helix 27	AC9	A	616	621	Right-handed 310
Helix 28	AD1	B	30	34	Right-handed 310
Helix 29	AD2	B	109	122	Right-handed alpha
Helix 30	AD3	B	127	145	Right-handed alpha
Helix 31	AD4	B	148	163	Right-handed alpha
Helix 32	AD5	B	168	175	Right-handed alpha
Helix 33	AD6	B	178	188	Right-handed alpha
Helix 34	AD7	B	206	210	Right-handed 310
Helix 35	AD8	B	218	222	Right-handed 310
Helix 36	AD9	B	231	236	Right-handed alpha
Helix 37	AE1	B	238	245	Right-handed alpha
Helix 38	AE2	B	265	269	Right-handed 310
Helix 39	AE3	B	294	298	Right-handed 310
Helix 40	AE4	B	299	313	Right-handed alpha
Helix 41	AE5	B	330	335	Right-handed alpha
Helix 42	AE6	B	336	339	Right-handed 310
Helix 43	AE7	B	368	386	Right-handed alpha
Helix 44	AE8	B	396	399	Right-handed 310
Helix 45	AE9	B	400	415	Right-handed alpha
Helix 46	AF1	B	427	437	Right-handed alpha
Helix 47	AF2	B	445	449	Right-handed 310
Helix 48	AF3	B	451	464	Right-handed alpha
Helix 49	AF4	B	465	469	Right-handed 310
Helix 50	AF5	B	483	505	Right-handed alpha
Helix 51	AF6	B	532	536	Right-handed 310
Helix 52	AF7	B	541	549	Right-handed alpha
Helix 53	AF8	B	552	566	Right-handed alpha
Helix 54	AF9	B	567	571	Right-handed 310
Helix 55	AG1	B	616	621	Right-handed 310
Helix 56	AG2	C	30	34	Right-handed 310
Helix 57	AG3	C	109	118	Right-handed alpha
Helix 58	AG4	C	128	146	Right-handed alpha
Helix 59	AG5	C	148	161	Right-handed alpha
Helix 60	AG6	C	170	175	Right-handed alpha
Helix 61	AG7	C	178	188	Right-handed alpha
Helix 62	AG8	C	206	210	Right-handed 310
Helix 63	AG9	C	218	222	Right-handed 310
Helix 64	AH1	C	231	236	Right-handed alpha
Helix 65	AH2	C	238	245	Right-handed alpha
Helix 66	AH3	C	265	269	Right-handed 310
Helix 67	AH4	C	299	313	Right-handed alpha
Helix 68	AH5	C	330	335	Right-handed alpha
Helix 69	AH6	C	336	339	Right-handed 310
Helix 70	AH7	C	368	385	Right-handed alpha
Helix 71	AH8	C	396	399	Right-handed 310
Helix 72	AH9	C	400	415	Right-handed alpha
Helix 73	AI1	C	427	437	Right-handed alpha
Helix 74	AI2	C	445	449	Right-handed 310
Helix 75	AI3	C	451	464	Right-handed alpha
Helix 76	AI4	C	465	469	Right-handed 310
Helix 77	AI5	C	483	505	Right-handed alpha
Helix 78	AI6	C	513	517	Right-handed 310
Helix 79	AI7	C	541	548	Right-handed alpha
Helix 80	AI8	C	552	566	Right-handed alpha
Helix 81	AI9	C	567	571	Right-handed 310
Helix 82	AJ1	C	616	621	Right-handed 310
Helix 83	AJ2	D	30	34	Right-handed 310
Helix 84	AJ3	D	109	122	Right-handed alpha
Helix 85	AJ4	D	127	145	Right-handed alpha
Helix 86	AJ5	D	148	163	Right-handed alpha
Helix 87	AJ6	D	168	176	Right-handed alpha
Helix 88	AJ7	D	178	188	Right-handed alpha
Helix 89	AJ8	D	206	210	Right-handed 310
Helix 90	AJ9	D	218	222	Right-handed 310
Helix 91	AK1	D	231	236	Right-handed alpha
Helix 92	AK2	D	238	245	Right-handed alpha
Helix 93	AK3	D	265	269	Right-handed 310
Helix 94	AK4	D	294	298	Right-handed 310
Helix 95	AK5	D	299	313	Right-handed alpha
Helix 96	AK6	D	330	335	Right-handed alpha
Helix 97	AK7	D	336	339	Right-handed 310
Helix 98	AK8	D	368	385	Right-handed alpha
Helix 99	AK9	D	396	399	Right-handed 310
Helix 100	AL1	D	400	415	Right-handed alpha
Helix 101	AL2	D	427	437	Right-handed alpha
Helix 102	AL3	D	445	449	Right-handed 310
Helix 103	AL4	D	451	464	Right-handed alpha
Helix 104	AL5	D	465	469	Right-handed 310
Helix 105	AL6	D	483	505	Right-handed alpha
Helix 106	AL7	D	513	517	Right-handed 310
Helix 107	AL8	D	532	536	Right-handed 310
Helix 108	AL9	D	541	548	Right-handed alpha
Helix 109	AM1	D	552	566	Right-handed alpha
Helix 110	AM2	D	567	571	Right-handed 310
Helix 111	AM3	D	616	621	Right-handed 310

There are 31 sheets in PDB entry 5VT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	44	51	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	200	205	parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	59	66	anti-parallel
Strand 5	A	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	200	205	parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	419	423	parallel
Strand 3	A	390	394	parallel
Strand 4	A	316	321	parallel
Strand 5	A	249	252	parallel
Strand 6	A	212	216	parallel
Strand 7	A	507	511	parallel
Strand 8	A	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	578	first strand
Strand 2	A	585	592	anti-parallel
Strand 3	A	595	602	anti-parallel
Strand 4	A	656	661	anti-parallel
Strand 5	A	628	632	anti-parallel
Strand 6	A	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	613	first strand
Strand 2	A	645	649	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	44	51	anti-parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	200	205	parallel
Strand 3	B	98	108	anti-parallel
Strand 4	B	59	66	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	200	205	parallel
Strand 3	B	98	108	anti-parallel
Strand 4	B	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	419	423	parallel
Strand 3	B	390	394	parallel
Strand 4	B	316	321	parallel
Strand 5	B	249	252	parallel
Strand 6	B	212	216	parallel
Strand 7	B	507	511	parallel
Strand 8	B	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	578	first strand
Strand 2	B	585	592	anti-parallel
Strand 3	B	595	602	anti-parallel
Strand 4	B	656	661	anti-parallel
Strand 5	B	628	632	anti-parallel
Strand 6	B	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	613	first strand
Strand 2	B	645	649	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	44	51	anti-parallel
Strand 3	C	87	93	anti-parallel
Strand 4	C	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	200	205	parallel
Strand 3	C	98	108	anti-parallel
Strand 4	C	59	66	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	200	205	parallel
Strand 3	C	98	108	anti-parallel
Strand 4	C	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	442	first strand
Strand 2	C	419	423	parallel
Strand 3	C	390	394	parallel
Strand 4	C	316	321	parallel
Strand 5	C	249	252	parallel
Strand 6	C	212	216	parallel
Strand 7	C	507	511	parallel
Strand 8	C	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	325	first strand
Strand 2	C	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	576	578	first strand
Strand 2	C	585	592	anti-parallel
Strand 3	C	595	602	anti-parallel
Strand 4	C	656	661	anti-parallel
Strand 5	C	628	632	anti-parallel
Strand 6	C	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	609	614	first strand
Strand 2	C	644	649	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	44	51	anti-parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	200	205	parallel
Strand 3	D	98	108	anti-parallel
Strand 4	D	59	66	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	200	205	parallel
Strand 3	D	98	108	anti-parallel
Strand 4	D	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	442	first strand
Strand 2	D	419	423	parallel
Strand 3	D	390	394	parallel
Strand 4	D	316	321	parallel
Strand 5	D	249	252	parallel
Strand 6	D	212	216	parallel
Strand 7	D	507	511	parallel
Strand 8	D	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	325	first strand
Strand 2	D	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	576	578	first strand
Strand 2	D	585	592	anti-parallel
Strand 3	D	595	602	anti-parallel
Strand 4	D	656	661	anti-parallel
Strand 5	D	628	632	anti-parallel
Strand 6	D	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	609	614	first strand
Strand 2	D	644	649	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VT4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VT4