Analysis of interatomic Contacts of Structural Units in PDB entry:
5VT8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VT8 entry

There are 4 chains in PDB entry 5VT8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 2481	ILE 2692
A	ASP 2481	ILE 2692
C	ASP 2481	ILE 2692
D	ASP 2481	ALA 2688

There are 13 helices in PDB entry 5VT8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2529	2531	Right-handed 310
Helix 2	AA2	B	2619	2623	Right-handed 310
Helix 3	AA3	B	2636	2639	Right-handed 310
Helix 4	AA4	A	2529	2531	Right-handed 310
Helix 5	AA5	A	2619	2623	Right-handed 310
Helix 6	AA6	A	2636	2639	Right-handed 310
Helix 7	AA7	C	2515	2519	Right-handed 310
Helix 8	AA8	C	2529	2531	Right-handed 310
Helix 9	AA9	C	2619	2624	Right-handed 310
Helix 10	AB1	C	2636	2639	Right-handed 310
Helix 11	AB2	D	2529	2531	Right-handed 310
Helix 12	AB3	D	2619	2624	Right-handed 310
Helix 13	AB4	D	2637	2639	Right-handed 310

There are 22 sheets in PDB entry 5VT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2485	2486	first strand
Strand 2	B	2510	2511	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2490	2496	first strand
Strand 2	B	2569	2579	parallel
Strand 3	B	2553	2562	anti-parallel
Strand 4	B	2521	2526	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2504	2507	first strand
Strand 2	B	2541	2544	anti-parallel
Strand 3	B	2533	2535	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2587	2590	first strand
Strand 2	B	2613	2615	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2595	2600	first strand
Strand 2	B	2680	2690	parallel
Strand 3	B	2663	2672	anti-parallel
Strand 4	B	2625	2629	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2608	2611	first strand
Strand 2	B	2649	2652	anti-parallel
Strand 3	B	2641	2643	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2490	2496	first strand
Strand 2	A	2569	2579	parallel
Strand 3	A	2553	2561	anti-parallel
Strand 4	A	2522	2526	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2504	2507	first strand
Strand 2	A	2541	2544	anti-parallel
Strand 3	A	2533	2535	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2587	2590	first strand
Strand 2	A	2613	2615	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2596	2600	first strand
Strand 2	A	2680	2690	parallel
Strand 3	A	2663	2672	anti-parallel
Strand 4	A	2625	2629	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2608	2611	first strand
Strand 2	A	2649	2652	anti-parallel
Strand 3	A	2641	2643	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2485	2486	first strand
Strand 2	C	2510	2511	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2490	2496	first strand
Strand 2	C	2569	2579	parallel
Strand 3	C	2553	2561	anti-parallel
Strand 4	C	2522	2526	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2504	2507	first strand
Strand 2	C	2541	2544	anti-parallel
Strand 3	C	2533	2535	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2587	2590	first strand
Strand 2	C	2613	2615	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2596	2599	first strand
Strand 2	C	2680	2689	parallel
Strand 3	C	2663	2671	anti-parallel
Strand 4	C	2626	2629	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2608	2611	first strand
Strand 2	C	2649	2652	anti-parallel
Strand 3	C	2641	2643	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2490	2496	first strand
Strand 2	D	2569	2579	parallel
Strand 3	D	2553	2561	anti-parallel
Strand 4	D	2522	2526	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2504	2507	first strand
Strand 2	D	2541	2544	anti-parallel
Strand 3	D	2533	2535	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2587	2590	first strand
Strand 2	D	2613	2615	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2595	2598	first strand
Strand 2	D	2680	2688	parallel
Strand 3	D	2664	2671	anti-parallel
Strand 4	D	2626	2629	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2608	2611	first strand
Strand 2	D	2649	2652	anti-parallel
Strand 3	D	2641	2643	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VT8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VT8