Analysis of interatomic Contacts of Structural Units in PDB entry:
5VT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VT9 entry

There are 4 chains in PDB entry 5VT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 77GLU 210
C
 LYS 801ALA 830
B
 ALA 73ALA 211
D
 THR 803ALA 830
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5VT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 91Right-handed alpha
Helix 2
AA2
A
98 108Right-handed alpha
Helix 3
AA3
A
113 125Right-handed alpha
Helix 4
AA4
A
129 140Right-handed alpha
Helix 5
AA5
A
146 156Right-handed alpha
Helix 6
AA6
A
166 177Right-handed alpha
Helix 7
AA7
A
182 194Right-handed alpha
Helix 8
AA8
A
200 210Right-handed alpha
Helix 9
AA9
C
802 817Right-handed alpha
Helix 10
AB1
C
818 821Right-handed 310
Helix 11
AB2
B
74 78Right-handed alpha
Helix 12
AB3
B
79 91Right-handed alpha
Helix 13
AB4
B
98 108Right-handed alpha
Helix 14
AB5
B
113 125Right-handed alpha
Helix 15
AB6
B
129 140Right-handed alpha
Helix 16
AB7
B
146 156Right-handed alpha
Helix 17
AB8
B
167 177Right-handed alpha
Helix 18
AB9
B
182 194Right-handed alpha
Helix 19
AC1
B
201 210Right-handed alpha
Helix 20
AC2
D
804 817Right-handed alpha
Helix 21
AC3
D
818 821Right-handed 310
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There are 3 sheets in PDB entry 5VT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
127 128anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
127 128anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
198 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il