Analysis of interatomic Contacts of Structural Units in PDB entry:
5VTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VTO entry

There are 2 chains in PDB entry 5VTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 12PRO 174
B
 LYS 212PRO 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5VTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 28Right-handed alpha
Helix 2
AA2
A
36 54Right-handed alpha
Helix 3
AA3
A
61 68Right-handed alpha
Helix 4
AA4
A
72 87Right-handed alpha
Helix 5
AA5
A
99 113Right-handed alpha
Helix 6
AA6
A
123 129Right-handed alpha
Helix 7
AA7
A
129 139Right-handed alpha
Helix 8
AA8
A
148 169Right-handed alpha
Helix 9
AA9
B
223 228Right-handed alpha
Helix 10
AB1
B
236 254Right-handed alpha
Helix 11
AB2
B
261 268Right-handed alpha
Helix 12
AB3
B
272 287Right-handed alpha
Helix 13
AB4
B
299 313Right-handed alpha
Helix 14
AB5
B
323 329Right-handed alpha
Helix 15
AB6
B
329 339Right-handed alpha
Helix 16
AB7
B
348 369Right-handed alpha
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There are 2 sheets in PDB entry 5VTO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
18 20parallel
Strand 3
A
89 92parallel
Strand 4
A
116 118parallel
Strand 5
A
141 143parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
218 220parallel
Strand 3
B
289 292parallel
Strand 4
B
316 318parallel
Strand 5
B
341 343parallel
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