Analysis of interatomic Contacts of Structural Units in PDB entry:
5VTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VTP entry

There is 1 chain in PDB entry 5VTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ILE 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5VTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
12 14Right-handed 310
Helix 3
AA3
A
17 21Right-handed 310
Helix 4
AA4
A
33 43Right-handed alpha
Helix 5
AA5
A
63 68Right-handed alpha
Helix 6
AA6
A
76 84Right-handed alpha
Helix 7
AA7
A
128 146Right-handed alpha
Helix 8
AA8
A
161 172Right-handed alpha
Helix 9
AA9
A
182 187Right-handed alpha
Helix 10
AB1
A
187 197Right-handed alpha
Helix 11
AB2
A
209 215Right-handed 310
Helix 12
AB3
A
232 256Right-handed alpha
Helix 13
AB4
A
267 276Right-handed alpha
Helix 14
AB5
A
287 289Right-handed 310
Helix 15
AB6
A
290 296Right-handed alpha
Helix 16
AB7
A
301 305Right-handed 310
Helix 17
AB8
A
310 320Right-handed alpha
Helix 18
AB9
A
326 335Right-handed alpha
Helix 19
AC1
A
338 352Right-handed alpha
Helix 20
AC2
A
366 378Right-handed alpha
Helix 21
AC3
A
408 435Right-handed alpha
Helix 22
AC4
A
474 489Right-handed alpha
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There are 4 sheets in PDB entry 5VTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
26 30anti-parallel
Strand 4
A
261 265anti-parallel
Strand 5
A
283 285parallel
Strand 6
A
220 221parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
88 91parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
124 126anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 400first strand
Strand 2
A
498 509anti-parallel
Strand 3
A
437 448anti-parallel
Strand 4
A
454 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il