Analysis of interatomic Contacts of Structural Units in PDB entry:
5VUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VUG entry

There is 1 chain in PDB entry 5VUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6HIS 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5VUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 34Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
73 78Right-handed alpha
Helix 5
AA5
A
105 112Right-handed alpha
Helix 6
AA6
A
130 142Right-handed alpha
Helix 7
AA7
A
144 146Right-handed 310
Helix 8
AA8
A
154 163Right-handed alpha
Helix 9
AA9
A
172 187Right-handed alpha
Helix 10
AB1
A
228 237Right-handed alpha
Helix 11
AB2
A
250 261Right-handed alpha
Helix 12
AB3
A
269 275Right-handed alpha
Helix 13
AB4
A
276 278Right-handed 310
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There are 3 sheets in PDB entry 5VUG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
38 45anti-parallel
Strand 3
A
118 122parallel
Strand 4
A
148 151parallel
Strand 5
A
168 169parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
38 45anti-parallel
Strand 3
A
9 13parallel
Strand 4
A
264 267parallel
Strand 5
A
242 246parallel
Strand 6
A
198 202parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 212first strand
Strand 2
A
217 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il