Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VVE entry

There are 2 chains in PDB entry 5VVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 242
B
 HIS -3VAL 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5VVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
30 47Right-handed alpha
Helix 3
AA3
A
59 74Right-handed alpha
Helix 4
AA4
A
84 87Right-handed 310
Helix 5
AA5
A
91 95Right-handed 310
Helix 6
AA6
A
98 107Right-handed alpha
Helix 7
AA7
A
107 117Right-handed alpha
Helix 8
AA8
A
132 140Right-handed 310
Helix 9
AA9
A
152 167Right-handed alpha
Helix 10
AB1
A
167 174Right-handed alpha
Helix 11
AB2
A
183 195Right-handed alpha
Helix 12
AB3
A
198 203Right-handed alpha
Helix 13
AB4
A
231 241Right-handed alpha
Helix 14
AB5
B
13 18Right-handed alpha
Helix 15
AB6
B
30 47Right-handed alpha
Helix 16
AB7
B
59 73Right-handed alpha
Helix 17
AB8
B
84 87Right-handed 310
Helix 18
AB9
B
91 95Right-handed 310
Helix 19
AC1
B
98 107Right-handed alpha
Helix 20
AC2
B
107 117Right-handed alpha
Helix 21
AC3
B
132 140Right-handed 310
Helix 22
AC4
B
152 167Right-handed alpha
Helix 23
AC5
B
167 174Right-handed alpha
Helix 24
AC6
B
183 196Right-handed alpha
Helix 25
AC7
B
198 203Right-handed alpha
Helix 26
AC8
B
231 241Right-handed alpha
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There are 2 sheets in PDB entry 5VVE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
53 56parallel
Strand 3
A
178 182parallel
Strand 4
A
3 9parallel
Strand 5
A
213 217anti-parallel
Strand 6
A
223 228anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 82first strand
Strand 2
B
53 56parallel
Strand 3
B
178 182parallel
Strand 4
B
3 9parallel
Strand 5
B
213 217anti-parallel
Strand 6
B
223 228anti-parallel
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