Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VVG entry

There are 4 chains in PDB entry 5VVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 67	VAL 383
A	MET 385	TRP 482
B	LYS 69	VAL 383
B	MET 385	TRP 482

There are 37 helices in PDB entry 5VVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	90	Right-handed 310
Helix 2	AA2	A	108	112	Right-handed 310
Helix 3	AA3	A	121	140	Right-handed alpha
Helix 4	AA4	A	145	163	Right-handed alpha
Helix 5	AA5	A	168	182	Right-handed alpha
Helix 6	AA6	A	188	192	Right-handed 310
Helix 7	AA7	A	205	222	Right-handed alpha
Helix 8	AA8	A	223	225	Right-handed 310
Helix 9	AA9	A	269	279	Right-handed alpha
Helix 10	AB1	A	308	312	Right-handed 310
Helix 11	AB2	A	322	329	Right-handed 310
Helix 12	AB3	A	361	366	Right-handed alpha
Helix 13	AB4	A	366	371	Right-handed alpha
Helix 14	AB5	A	377	385	Right-handed alpha
Helix 15	AB6	A	391	394	Right-handed 310
Helix 16	AB7	A	395	415	Right-handed alpha
Helix 17	AB8	A	421	441	Right-handed alpha
Helix 18	AB9	A	446	451	Right-handed alpha
Helix 19	AC1	A	455	464	Right-handed 310
Helix 20	AC2	B	85	90	Right-handed 310
Helix 21	AC3	B	122	140	Right-handed alpha
Helix 22	AC4	B	145	163	Right-handed alpha
Helix 23	AC5	B	168	182	Right-handed alpha
Helix 24	AC6	B	188	192	Right-handed 310
Helix 25	AC7	B	205	222	Right-handed alpha
Helix 26	AC8	B	223	225	Right-handed 310
Helix 27	AC9	B	269	279	Right-handed alpha
Helix 28	AD1	B	308	312	Right-handed 310
Helix 29	AD2	B	322	328	Right-handed alpha
Helix 30	AD3	B	361	366	Right-handed alpha
Helix 31	AD4	B	366	371	Right-handed alpha
Helix 32	AD5	B	377	385	Right-handed alpha
Helix 33	AD6	B	391	394	Right-handed 310
Helix 34	AD7	B	395	415	Right-handed alpha
Helix 35	AD8	B	421	441	Right-handed alpha
Helix 36	AD9	B	446	451	Right-handed alpha
Helix 37	AE1	B	455	464	Right-handed 310

There are 14 sheets in PDB entry 5VVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	81	83	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	229	232	parallel
Strand 3	A	355	356	anti-parallel
Strand 4	A	337	338	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	293	296	anti-parallel
Strand 3	A	303	305	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	263	265	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	316	first strand
Strand 2	A	331	333	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	350	first strand
Strand 2	A	342	345	anti-parallel
Strand 3	A	474	476	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	419	420	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	81	83	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	229	232	parallel
Strand 3	B	355	356	anti-parallel
Strand 4	B	337	338	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	293	296	anti-parallel
Strand 3	B	303	305	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	263	265	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	316	first strand
Strand 2	B	331	333	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	350	first strand
Strand 2	B	342	345	anti-parallel
Strand 3	B	474	476	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	419	420	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVG