Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VVH entry

There are 7 chains in PDB entry 5VVH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 90	MSE 297
B	ASN 90	GLU 298
C	ALA 91	GLU 298
D	SER 89	GLU 298
E	ASN 90	MSE 297
F	ASN 90	MSE 297
G	ALA 91	GLU 134

There are 76 helices in PDB entry 5VVH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	103	Right-handed alpha
Helix 2	AA2	A	104	114	Right-handed alpha
Helix 3	AA3	A	128	138	Right-handed alpha
Helix 4	AA4	A	172	177	Right-handed 310
Helix 5	AA5	A	181	186	Right-handed 310
Helix 6	AA6	A	197	207	Right-handed alpha
Helix 7	AA7	A	220	230	Right-handed alpha
Helix 8	AA8	A	238	243	Right-handed alpha
Helix 9	AA9	A	244	246	Right-handed 310
Helix 10	AB1	A	273	294	Right-handed alpha
Helix 11	AB2	B	98	103	Right-handed alpha
Helix 12	AB3	B	104	115	Right-handed alpha
Helix 13	AB4	B	128	138	Right-handed alpha
Helix 14	AB5	B	172	177	Right-handed 310
Helix 15	AB6	B	181	186	Right-handed 310
Helix 16	AB7	B	197	207	Right-handed alpha
Helix 17	AB8	B	220	230	Right-handed alpha
Helix 18	AB9	B	238	243	Right-handed alpha
Helix 19	AC1	B	244	246	Right-handed 310
Helix 20	AC2	B	273	294	Right-handed alpha
Helix 21	AC3	C	98	103	Right-handed alpha
Helix 22	AC4	C	104	116	Right-handed alpha
Helix 23	AC5	C	128	138	Right-handed alpha
Helix 24	AC6	C	172	177	Right-handed 310
Helix 25	AC7	C	182	186	Right-handed 310
Helix 26	AC8	C	197	207	Right-handed alpha
Helix 27	AC9	C	220	230	Right-handed alpha
Helix 28	AD1	C	238	243	Right-handed alpha
Helix 29	AD2	C	244	246	Right-handed 310
Helix 30	AD3	C	273	294	Right-handed alpha
Helix 31	AD4	D	98	104	Right-handed alpha
Helix 32	AD5	D	104	114	Right-handed alpha
Helix 33	AD6	D	128	139	Right-handed alpha
Helix 34	AD7	D	172	177	Right-handed 310
Helix 35	AD8	D	181	186	Right-handed 310
Helix 36	AD9	D	197	207	Right-handed alpha
Helix 37	AE1	D	220	230	Right-handed alpha
Helix 38	AE2	D	240	246	Right-handed 310
Helix 39	AE3	D	273	294	Right-handed alpha
Helix 40	AE4	E	98	103	Right-handed alpha
Helix 41	AE5	E	104	114	Right-handed alpha
Helix 42	AE6	E	128	138	Right-handed alpha
Helix 43	AE7	E	172	177	Right-handed 310
Helix 44	AE8	E	197	207	Right-handed alpha
Helix 45	AE9	E	220	230	Right-handed alpha
Helix 46	AF1	E	241	245	Right-handed 310
Helix 47	AF2	E	273	294	Right-handed alpha
Helix 48	AF3	F	98	103	Right-handed alpha
Helix 49	AF4	F	104	114	Right-handed alpha
Helix 50	AF5	F	128	138	Right-handed alpha
Helix 51	AF6	F	172	177	Right-handed 310
Helix 52	AF7	F	181	186	Right-handed 310
Helix 53	AF8	F	197	207	Right-handed alpha
Helix 54	AF9	F	220	230	Right-handed alpha
Helix 55	AG1	F	238	243	Right-handed alpha
Helix 56	AG2	F	273	293	Right-handed alpha
Helix 57	AG3	G	98	104	Right-handed alpha
Helix 58	AG4	G	104	114	Right-handed alpha
Helix 59	AG5	G	115	117	Right-handed 310
Helix 60	AG6	G	128	138	Right-handed alpha
Helix 61	AG7	G	172	177	Right-handed 310
Helix 62	AG8	G	181	186	Right-handed 310
Helix 63	AG9	G	197	207	Right-handed alpha
Helix 64	AH1	G	220	230	Right-handed alpha
Helix 65	AH2	G	238	243	Right-handed alpha
Helix 66	AH3	G	273	293	Right-handed alpha
Helix 67	AH4	H	98	104	Right-handed alpha
Helix 68	AH5	H	104	117	Right-handed alpha
Helix 69	AH6	H	128	138	Right-handed alpha
Helix 70	AH7	H	172	177	Right-handed 310
Helix 71	AH8	H	182	186	Right-handed 310
Helix 72	AH9	H	197	207	Right-handed alpha
Helix 73	AI1	H	220	230	Right-handed alpha
Helix 74	AI2	H	238	243	Right-handed alpha
Helix 75	AI3	H	244	246	Right-handed 310
Helix 76	AI4	H	273	294	Right-handed alpha

There are 16 sheets in PDB entry 5VVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	163	first strand
Strand 2	A	259	267	anti-parallel
Strand 3	A	143	147	anti-parallel
Strand 4	A	92	97	parallel
Strand 5	A	121	126	parallel
Strand 6	B	216	218	parallel
Strand 7	B	192	193	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	165	169	anti-parallel
Strand 3	A	249	253	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	216	218	parallel
Strand 3	B	121	126	parallel
Strand 4	B	92	97	parallel
Strand 5	B	143	147	parallel
Strand 6	B	259	267	anti-parallel
Strand 7	B	155	163	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	165	169	anti-parallel
Strand 3	B	249	253	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	163	first strand
Strand 2	C	259	267	anti-parallel
Strand 3	C	143	147	anti-parallel
Strand 4	C	92	97	parallel
Strand 5	C	121	126	parallel
Strand 6	D	216	218	parallel
Strand 7	D	192	193	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	165	169	anti-parallel
Strand 3	C	249	253	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	216	218	parallel
Strand 3	D	121	126	parallel
Strand 4	D	92	97	parallel
Strand 5	D	143	147	parallel
Strand 6	D	259	267	anti-parallel
Strand 7	D	155	163	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	165	169	anti-parallel
Strand 3	D	249	253	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	163	first strand
Strand 2	E	259	267	anti-parallel
Strand 3	E	143	147	anti-parallel
Strand 4	E	92	97	parallel
Strand 5	E	121	126	parallel
Strand 6	F	216	218	parallel
Strand 7	F	192	193	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	237	first strand
Strand 2	E	165	169	anti-parallel
Strand 3	E	249	253	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	193	first strand
Strand 2	E	216	218	parallel
Strand 3	F	121	126	parallel
Strand 4	F	92	97	parallel
Strand 5	F	143	147	parallel
Strand 6	F	259	267	anti-parallel
Strand 7	F	155	163	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	165	169	anti-parallel
Strand 3	F	249	253	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	163	first strand
Strand 2	G	259	267	anti-parallel
Strand 3	G	143	147	anti-parallel
Strand 4	G	92	97	parallel
Strand 5	G	121	126	parallel
Strand 6	H	216	218	parallel
Strand 7	H	192	193	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	237	first strand
Strand 2	G	165	168	anti-parallel
Strand 3	G	250	253	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	192	193	first strand
Strand 2	G	216	218	parallel
Strand 3	H	121	126	parallel
Strand 4	H	92	97	parallel
Strand 5	H	143	147	parallel
Strand 6	H	259	267	anti-parallel
Strand 7	H	155	163	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	235	237	first strand
Strand 2	H	165	169	anti-parallel
Strand 3	H	249	253	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VVH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVH