Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VVI entry

There are 3 chains in PDB entry 5VVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 91GLU 298
B
 ALA 91GLU 298
C
 ALA 91MSE 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5VVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 103Right-handed alpha
Helix 2
AA2
A
104 115Right-handed alpha
Helix 3
AA3
A
128 138Right-handed alpha
Helix 4
AA4
A
172 177Right-handed 310
Helix 5
AA5
A
181 186Right-handed 310
Helix 6
AA6
A
197 207Right-handed alpha
Helix 7
AA7
A
220 230Right-handed alpha
Helix 8
AA8
A
238 243Right-handed alpha
Helix 9
AA9
A
244 246Right-handed 310
Helix 10
AB1
A
273 294Right-handed alpha
Helix 11
AB2
B
98 103Right-handed alpha
Helix 12
AB3
B
104 114Right-handed alpha
Helix 13
AB4
B
128 137Right-handed alpha
Helix 14
AB5
B
172 177Right-handed 310
Helix 15
AB6
B
182 186Right-handed 310
Helix 16
AB7
B
197 208Right-handed alpha
Helix 17
AB8
B
220 231Right-handed alpha
Helix 18
AB9
B
238 243Right-handed alpha
Helix 19
AC1
B
244 246Right-handed 310
Helix 20
AC2
B
273 294Right-handed alpha
Helix 21
AC3
C
98 103Right-handed alpha
Helix 22
AC4
C
104 115Right-handed alpha
Helix 23
AC5
C
128 138Right-handed alpha
Helix 24
AC6
C
172 177Right-handed 310
Helix 25
AC7
C
182 186Right-handed 310
Helix 26
AC8
C
197 208Right-handed alpha
Helix 27
AC9
C
220 230Right-handed alpha
Helix 28
AD1
C
238 243Right-handed alpha
Helix 29
AD2
C
244 246Right-handed 310
Helix 30
AD3
C
273 294Right-handed alpha
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There are 4 sheets in PDB entry 5VVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 126first strand
Strand 2
A
92 97parallel
Strand 3
A
143 147parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
155 163anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
190 192parallel
Strand 3
A
234 237parallel
Strand 4
A
165 169anti-parallel
Strand 5
A
249 253anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 163first strand
Strand 2
B
259 267anti-parallel
Strand 3
B
143 147anti-parallel
Strand 4
B
92 97parallel
Strand 5
B
121 126parallel
Strand 6
C
216 218parallel
Strand 7
C
190 192parallel
Strand 8
C
234 237parallel
Strand 9
C
165 169anti-parallel
Strand 10
C
249 253anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 253first strand
Strand 2
B
165 169anti-parallel
Strand 3
B
234 237anti-parallel
Strand 4
B
190 192parallel
Strand 5
B
216 218parallel
Strand 6
C
121 126parallel
Strand 7
C
92 97parallel
Strand 8
C
143 147parallel
Strand 9
C
259 267anti-parallel
Strand 10
C
155 163anti-parallel
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