Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VVM entry

There are 2 chains in PDB entry 5VVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2153	VAL 2473
B	SER 2147	VAL 2473

There are 4 helices in PDB entry 5VVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2302	2306	Right-handed 310
Helix 2	AA2	A	2461	2465	Right-handed 310
Helix 3	AA3	B	2302	2306	Right-handed 310
Helix 4	AA4	B	2461	2465	Right-handed 310

There are 15 sheets in PDB entry 5VVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2157	2161	first strand
Strand 2	A	2250	2261	parallel
Strand 3	A	2230	2239	anti-parallel
Strand 4	A	2184	2194	anti-parallel
Strand 5	A	2200	2201	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2169	2172	first strand
Strand 2	A	2216	2219	anti-parallel
Strand 3	A	2208	2210	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2269	2270	first strand
Strand 2	A	2297	2298	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2278	2283	first strand
Strand 2	A	2360	2370	parallel
Strand 3	A	2344	2353	anti-parallel
Strand 4	A	2308	2313	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2291	2294	first strand
Strand 2	A	2330	2333	anti-parallel
Strand 3	A	2321	2323	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2377	2379	first strand
Strand 2	A	2403	2405	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2415	2417	first strand
Strand 2	A	2453	2455	anti-parallel
Strand 3	A	2467	2469	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2155	2161	first strand
Strand 2	B	2254	2261	parallel
Strand 3	B	2230	2239	anti-parallel
Strand 4	B	2184	2194	anti-parallel
Strand 5	B	2200	2201	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2169	2172	first strand
Strand 2	B	2216	2219	anti-parallel
Strand 3	B	2208	2210	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2269	2271	first strand
Strand 2	B	2296	2298	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2278	2283	first strand
Strand 2	B	2360	2370	parallel
Strand 3	B	2344	2353	anti-parallel
Strand 4	B	2308	2316	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2291	2294	first strand
Strand 2	B	2330	2333	anti-parallel
Strand 3	B	2321	2323	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2377	2379	first strand
Strand 2	B	2403	2405	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2383	2385	first strand
Strand 2	B	2467	2473	parallel
Strand 3	B	2450	2455	anti-parallel
Strand 4	B	2415	2418	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2425	2427	first strand
Strand 2	B	2434	2436	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVM