Analysis of interatomic Contacts of Structural Units in PDB entry:
5VVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VVU entry

There are 4 chains in PDB entry 5VVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 59ASP 700
B
 PRO 393SER 396
C
 HIS 59PRO 694
D
 PRO 393SER 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5VVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 88Right-handed alpha
Helix 2
AA2
A
112 129Right-handed alpha
Helix 3
AA3
A
147 163Right-handed alpha
Helix 4
AA4
A
181 186Right-handed alpha
Helix 5
AA5
A
190 206Right-handed alpha
Helix 6
AA6
A
220 224Right-handed 310
Helix 7
AA7
A
231 241Right-handed alpha
Helix 8
AA8
A
260 272Right-handed alpha
Helix 9
AA9
A
300 307Right-handed 310
Helix 10
AB1
A
317 320Right-handed 310
Helix 11
AB2
A
321 333Right-handed alpha
Helix 12
AB3
A
375 388Right-handed alpha
Helix 13
AB4
A
389 391Right-handed 310
Helix 14
AB5
A
554 565Right-handed alpha
Helix 15
AB6
A
572 588Right-handed alpha
Helix 16
AB7
A
589 592Right-handed 310
Helix 17
AB8
A
604 604Right-handed 310
Helix 18
AB9
A
605 630Right-handed alpha
Helix 19
AC1
A
633 663Right-handed alpha
Helix 20
AC2
A
683 691Right-handed alpha
Helix 21
AC3
C
74 88Right-handed alpha
Helix 22
AC4
C
112 129Right-handed alpha
Helix 23
AC5
C
147 163Right-handed alpha
Helix 24
AC6
C
181 188Right-handed alpha
Helix 25
AC7
C
190 206Right-handed alpha
Helix 26
AC8
C
220 224Right-handed 310
Helix 27
AC9
C
227 230Right-handed 310
Helix 28
AD1
C
231 241Right-handed alpha
Helix 29
AD2
C
260 272Right-handed alpha
Helix 30
AD3
C
300 307Right-handed 310
Helix 31
AD4
C
317 319Right-handed 310
Helix 32
AD5
C
320 335Right-handed alpha
Helix 33
AD6
C
375 389Right-handed alpha
Helix 34
AD7
C
554 565Right-handed alpha
Helix 35
AD8
C
572 588Right-handed alpha
Helix 36
AD9
C
589 592Right-handed 310
Helix 37
AE1
C
605 630Right-handed alpha
Helix 38
AE2
C
633 663Right-handed alpha
Helix 39
AE3
C
664 667Right-handed 310
Helix 40
AE4
C
677 681Right-handed 310
Helix 41
AE5
C
683 691Right-handed alpha
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There are 2 sheets in PDB entry 5VVU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
92 95parallel
Strand 3
A
132 137parallel
Strand 4
A
168 172parallel
Strand 5
A
212 215parallel
Strand 6
A
246 249parallel
Strand 7
A
276 279parallel
Strand 8
A
309 312parallel
Strand 9
A
61 66parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 66first strand
Strand 2
C
92 95parallel
Strand 3
C
132 137parallel
Strand 4
C
168 172parallel
Strand 5
C
212 215parallel
Strand 6
C
246 249parallel
Strand 7
C
276 279parallel
Strand 8
C
309 312parallel
Strand 9
C
61 66parallel
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