Analysis of interatomic Contacts of Structural Units in PDB entry:
5VW1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VW1 entry

There is 1 chain in PDB entry 5VW1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LYS 1255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 5VW1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
121 132Right-handed alpha
Helix 5
AA5
A
134 145Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
175 180Right-handed alpha
Helix 8
AA8
A
180 196Right-handed alpha
Helix 9
AA9
A
207 214Right-handed alpha
Helix 10
AB1
A
217 227Right-handed alpha
Helix 11
AB2
A
236 246Right-handed alpha
Helix 12
AB3
A
253 257Right-handed 310
Helix 13
AB4
A
270 283Right-handed alpha
Helix 14
AB5
A
286 306Right-handed alpha
Helix 15
AB6
A
315 343Right-handed alpha
Helix 16
AB7
A
346 352Right-handed alpha
Helix 17
AB8
A
358 365Right-handed alpha
Helix 18
AB9
A
368 381Right-handed alpha
Helix 19
AC1
A
386 395Right-handed alpha
Helix 20
AC2
A
404 410Right-handed 310
Helix 21
AC3
A
411 427Right-handed alpha
Helix 22
AC4
A
430 436Right-handed alpha
Helix 23
AC5
A
436 446Right-handed alpha
Helix 24
AC6
A
477 482Right-handed alpha
Helix 25
AC7
A
483 496Right-handed alpha
Helix 26
AC8
A
512 525Right-handed alpha
Helix 27
AC9
A
541 552Right-handed alpha
Helix 28
AD1
A
560 568Right-handed alpha
Helix 29
AD2
A
568 573Right-handed alpha
Helix 30
AD3
A
591 602Right-handed alpha
Helix 31
AD4
A
603 609Right-handed alpha
Helix 32
AD5
A
612 626Right-handed alpha
Helix 33
AD6
A
628 637Right-handed alpha
Helix 34
AD7
A
638 641Right-handed 310
Helix 35
AD8
A
644 653Right-handed alpha
Helix 36
AD9
A
663 669Right-handed alpha
Helix 37
AE1
A
678 685Right-handed alpha
Helix 38
AE2
A
692 699Right-handed alpha
Helix 39
AE3
A
703 712Right-handed alpha
Helix 40
AE4
A
719 726Right-handed alpha
Helix 41
AE5
A
730 751Right-handed alpha
Helix 42
AE6
A
775 792Right-handed alpha
Helix 43
AE7
A
794 799Right-handed alpha
Helix 44
AE8
A
804 807Right-handed 310
Helix 45
AE9
A
808 817Right-handed alpha
Helix 46
AF1
A
829 836Right-handed 310
Helix 47
AF2
A
851 853Right-handed 310
Helix 48
AF3
A
860 865Right-handed 310
Helix 49
AF4
A
872 889Right-handed alpha
Helix 50
AF5
A
893 901Right-handed alpha
Helix 51
AF6
A
902 906Right-handed 310
Helix 52
AF7
A
909 922Right-handed alpha
Helix 53
AF8
A
925 940Right-handed alpha
Helix 54
AF9
A
959 971Right-handed alpha
Helix 55
AG1
A
980 1001Right-handed alpha
Helix 56
AG2
A
1002 1008Right-handed 310
Helix 57
AG3
A
1017 1022Right-handed 310
Helix 58
AG4
A
1025 1029Right-handed 310
Helix 59
AG5
A
1043 1047Right-handed 310
Helix 60
AG6
A
1077 1088Right-handed alpha
Helix 61
AG7
A
1127 1132Right-handed alpha
Helix 62
AG8
A
1170 1177Right-handed alpha
Helix 63
AG9
A
1177 1184Right-handed alpha
Helix 64
AH1
A
1191 1195Right-handed 310
Helix 65
AH2
A
1229 1241Right-handed alpha
Helix 66
AH3
A
1248 1261Right-handed alpha
Helix 67
AH4
A
1264 1281Right-handed alpha
Helix 68
AH5
A
1283 1296Right-handed alpha
Helix 69
AH6
A
1301 1312Right-handed alpha
Helix 70
AH7
A
1312 1317Right-handed alpha
Helix 71
AH8
A
1339 1344Right-handed 310
Helix 72
AH9
A
1363 1365Right-handed 310
Helix 73
AI1
B
2 13Right-handed alpha
Helix 74
AI2
B
50 60Right-handed alpha
Helix 75
AI3
B
67 69Right-handed 310
Helix 76
AI4
B
70 84Right-handed alpha
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There are 9 sheets in PDB entry 5VW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 763parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1203 1205anti-parallel
Strand 6
A
1211 1216anti-parallel
Strand 7
A
1219 1222anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
578 580anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1157 1167first strand
Strand 2
A
1139 1150anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 20first strand
Strand 2
B
29 33anti-parallel
Strand 3
B
40 44anti-parallel
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