Analysis of interatomic Contacts of Structural Units in PDB entry:
5VWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VWS entry

There is 1 chain in PDB entry 5VWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6GLY 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5VWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
59 63Right-handed 310
Helix 4
AA4
A
74 78Right-handed 310
Helix 5
AA5
A
81 94Right-handed alpha
Helix 6
AA6
A
95 102Right-handed alpha
Helix 7
AA7
A
102 116Right-handed alpha
Helix 8
AA8
A
130 142Right-handed alpha
Helix 9
AA9
A
144 146Right-handed 310
Helix 10
AB1
A
147 164Right-handed alpha
Helix 11
AB2
A
168 196Right-handed alpha
Helix 12
AB3
A
200 208Right-handed alpha
Helix 13
AB4
A
216 232Right-handed alpha
Helix 14
AB5
A
232 248Right-handed alpha
Helix 15
AB6
A
249 259Right-handed alpha
Helix 16
AB7
A
262 274Right-handed alpha
Helix 17
AB8
A
304 309Right-handed alpha
Helix 18
AB9
A
342 361Right-handed alpha
Helix 19
AC1
A
368 372Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5VWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
300 303parallel
Strand 4
A
280 284anti-parallel
Strand 5
A
56 57anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
386 389anti-parallel
Strand 3
A
364 366anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
382 384anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il